| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,361,888 – 6,361,983 |
| Length | 95 |
| Max. P | 0.971556 |
| Location | 6,361,888 – 6,361,983 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 78.42 |
| Mean single sequence MFE | -15.04 |
| Consensus MFE | -7.89 |
| Energy contribution | -8.30 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.82 |
| Structure conservation index | 0.52 |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.971556 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6361888 95 + 27905053 AUCAAUAAGGCCAACAAAGCUAAUUCGCU-------UCGCUUUAACUGGCCACAA-GCAAAAAACAAAAA-CUUGAA-AAUGCCACAAGUUAUAUAUUAUUUUAA ...((((((((((..(((((.........-------..)))))...)))))....-............((-((((..-.......)))))).....))))).... ( -15.90) >DroGri_CAF1 162191 86 + 1 AUCAAUAAA-UUGACAAA---AAUGCGCGCGCCUUUUAACUUUAACAAGCGCCAAAA-----ACCAAAUC---AAAA-AAUAACAUAAAGAAAAUAUU-----U- .((((....-))))....---..((.((((..................))))))...-----........---....-....................-----.- ( -6.87) >DroSec_CAF1 126363 96 + 1 AUCAAUAAGGCCAACAAAGCUAAUUCGCU-------UCGCUUUAACUGGCCACAA-GCAAAAAACAAAAAGCUUGAA-AAUGCCACAAAAUAUAUAUUAUUUUAA ........(((((..(((((.........-------..)))))...))))).(((-((............)))))..-........((((((.....)))))).. ( -18.40) >DroSim_CAF1 140060 96 + 1 AUCAAUAAGGCCAACAAAGCUAAUUCGCU-------UCGCUUUAACUGGCCACAA-GCAAAAAACAAAAAGCUUGAA-AAUGCCACAAAAUAUAUGUUAUUUUAA ........(((((..(((((.........-------..)))))...))))).(((-((............)))))..-........((((((.....)))))).. ( -18.40) >DroEre_CAF1 137682 96 + 1 AUCAAUAAGGCCAACAAAGCCAAUUCGCU-------UCGCUUUAACUGGCCACAA-ACAAGAAA-AAAAAGCUUGAAAAAUGCCACAAAAUAUAUAUUAUUUAAA ........(((((..(((((.((.....)-------).)))))...)))))....-.((((...-......))))............(((((.....)))))... ( -13.90) >DroYak_CAF1 127812 98 + 1 AUCAAUAAGGCCAACAAAGCAAAUUCGCU-------UCGCUUUAACUGGCCACAAAACAAGAGACAAAACGCUUGAAAAAUGCCACAAAAUAUGUAUUAUUUUAA ........(((((..(((((.........-------..)))))...)))))......((((.(......).)))).((((((..(((.....)))..)))))).. ( -16.80) >consensus AUCAAUAAGGCCAACAAAGCUAAUUCGCU_______UCGCUUUAACUGGCCACAA_ACAAAAAACAAAAAGCUUGAA_AAUGCCACAAAAUAUAUAUUAUUUUAA ........(((((..(((((..................)))))...)))))...................................................... ( -7.89 = -8.30 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:34 2006