Locus 2235

Sequence ID 3R_DroMel_CAF1
Location 6,359,974 – 6,360,081
Length 107
Max. P 0.883496
window3629

overview

Window 9

Location 6,359,974 – 6,360,081
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 95.33
Mean single sequence MFE -28.93
Consensus MFE -24.94
Energy contribution -24.42
Covariance contribution -0.52
Combinations/Pair 1.14
Mean z-score -1.57
Structure conservation index 0.86
SVM decision value 0.93
SVM RNA-class probability 0.883496
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6359974 107 - 27905053
UUCAGUUCGUUUGCCGAAAGGCUUAGGAACGCGGAAAAUUGAAUUAAUAAUUAUACGCGGUUUUCCCGCUGUGAUAACUAAGUAGUGAAGCGAUAAUUUACAGAGGG
....((((.(..(((....)))..).))))(((...(((((......)))))...)))......(((.((((((.......((......))......)))))).))) ( -29.82)
>DroSec_CAF1 124496 107 - 1
UUCAGUUCGUUUGCCGAAAGGCUUAGGAACGCGGAAAAUUGAAUUAAUAAUUAUACGUGGUUUUCCCGCUGUGAUAACUAAGUAGUGGAGCGAUAAUUUACAGUGGG
....((((.(..(((....)))..).))))(((...(((((......)))))...)))......((((((((((.......((......))......)))))))))) ( -31.22)
>DroSim_CAF1 138200 107 - 1
UUCAGUUCGUUUGCCGAAAGGCUUAGGAACGCGGAAAAUUGAAUUAAUAAUUAUACGUGGUUUUCCCGCUGUGAUAACUAAGUAGUGGAGCGAUAAUUUACAGAGGG
....((((.(..(((....)))..).))))(((...(((((......)))))...)))......(((.((((((.......((......))......)))))).))) ( -27.42)
>DroEre_CAF1 135788 107 - 1
UUCAGUUCGUUUGCCGAAAGGCUUAGGAACGCGGAGAAUUGAAUUAAUAAUUAUACGUGGUUUUCCCGCCGUGAUAACUAAGUAGUGCAGCGAUAAUUUACAGCUCG
....((((.(..(((....)))..).))))...(((...(((((((..........((((.....))))(((....(((....)))...))).)))))))...))). ( -28.80)
>DroYak_CAF1 125852 107 - 1
UUCAGUUCGUUUGCCGAAAGGCUUAGGAACGCGGAAAAUUGAAUUAAUAAUUAUACGUGCUUUUCCCGCCGCGAUAACUAAGUAGUGCAGCGAUAAUUUACAGGCGG
....((((.(..(((....)))..).))))(((...(((((......)))))...))).......(((((((....(((....)))...))(........).))))) ( -27.40)
>consensus
UUCAGUUCGUUUGCCGAAAGGCUUAGGAACGCGGAAAAUUGAAUUAAUAAUUAUACGUGGUUUUCCCGCUGUGAUAACUAAGUAGUGCAGCGAUAAUUUACAGAGGG
(((.((((.(..(((....)))..).))))...)))...(((((((..........((((.....))))(((....(((....)))...))).)))))))....... (-24.94 = -24.42 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:33 2006