| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,359,432 – 6,359,525 |
| Length | 93 |
| Max. P | 0.881430 |
| Location | 6,359,432 – 6,359,525 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 78.82 |
| Mean single sequence MFE | -19.93 |
| Consensus MFE | -11.72 |
| Energy contribution | -11.92 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.881430 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6359432 93 + 27905053 GAGGAAACGAGGGGCUGGGCAGAAAAA----------AAAGCACAAAAA-AUGGAUGUUGUAAAUUACUGAAAUCUAAUGGAAACGUUGACGUCAGUUGGUCUC ..(....)..(((((..(((.......----------...)).......-.................((((..((.((((....))))))..)))))..))))) ( -19.60) >DroVir_CAF1 133070 79 + 1 GAGAAAG------------CAAAAAA-----------AAGGGGGGGGA--AUUGAUAUUGUAAAUCAAUGAAAUCUAAUGGAAACAUUGACGUCAGUUGGUCGC ..((.((------------(......-----------...........--((((((.......))))))((..((.((((....))))))..)).)))..)).. ( -12.90) >DroSec_CAF1 123955 93 + 1 GAGGAAACGAGGGGCUGGGCAGAAAA-----------AAAGCAGAAAAAUGUGGAUGUUGUAAAUUACUGAAAUCUAAUGGAAACGUUGACGUCAGUUGGUCUC ..(....)..(((((..(((((....-----------...(((......))).....))))......((((..((.((((....))))))..)))))..))))) ( -22.70) >DroSim_CAF1 137659 93 + 1 GAGGAAACGAGGGGCUGGGCAGAAAA-----------AAAGCAGAAAAAUGUGGAUGUUGUAAAUUACUGAAAUCUAAUGGAAACGUUGACGUCAGUUGGUCUC ..(....)..(((((..(((((....-----------...(((......))).....))))......((((..((.((((....))))))..)))))..))))) ( -22.70) >DroEre_CAF1 135281 102 + 1 GAGGAACCAAGGGGCUGGGCAGCAAAAAAAAUAGAAAAAAACAGAAAA--AUACAUGUUGUAAAUUACUGAAAUCUAAUGGAAACGUUGACGUCAGUUGGUCUC ..........(((((..(((((((........................--.....))))))......((((..((.((((....))))))..)))))..))))) ( -20.85) >DroYak_CAF1 125329 101 + 1 GAGGAAACACG-GGUUGGGCAGAGAAGAAACAAAAAAACAACAGAAAA--AUGCAUGUUGUAAAUUACUGAAAUCUAAUGGAAACGUUGACGUCAGUUGGUCUC ..(....)...-....((((.................((((((.....--.....)))))).....(((((..((.((((....))))))..)))))..)))). ( -20.80) >consensus GAGGAAACGAGGGGCUGGGCAGAAAA___________AAAGCAGAAAA__AUGGAUGUUGUAAAUUACUGAAAUCUAAUGGAAACGUUGACGUCAGUUGGUCUC ................((((...................((((............)))).......(((((..((.((((....))))))..)))))..)))). (-11.72 = -11.92 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:32 2006