| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,348,717 – 6,348,807 |
| Length | 90 |
| Max. P | 0.750080 |
| Location | 6,348,717 – 6,348,807 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 75.76 |
| Mean single sequence MFE | -26.58 |
| Consensus MFE | -15.59 |
| Energy contribution | -15.62 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.750080 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6348717 90 - 27905053 ----CCCUGCCCG---------------UCCCCCCCCCCUGAGUGGAAUAAUCAAUUUCGAGGAUCAUAAACAACUUUUAAUGAAGUUGUUAAGUGCCAGCAGCUAGUU-------- ----..((((..(---------------..(......((((((..((....))...))).)))......(((((((((....)))))))))..)..)..))))......-------- ( -17.50) >DroVir_CAF1 119971 102 - 1 ----CUCUGCAUCCGCGUCUGGGGACGCUUUA---CGUAUGAGUGGAAUAAUCAAUUUCGAGGAUCAUAAACAACUUUUAAUGAAGUUGUUAAGUGCCAGCAGCUAGUU-------- ----..((((....(((((....)))))..((---(.(((((.((((((.....))))))....)))))(((((((((....)))))))))..)))...))))......-------- ( -28.50) >DroPse_CAF1 110959 84 - 1 ----CGCUUUCCG---------------U---------ACGAGUGGAAUAAUCAAUUUCGAGGAUCAUAAACAACUUUUAAUGAAGUUGUUAAGUGCCAGCAGCUAGC-----AGCU ----.(((....(---------------(---------((((.((((((.....))))))....))...(((((((((....)))))))))..)))).)))(((....-----.))) ( -19.20) >DroYak_CAF1 114401 91 - 1 CGCCCCCUGCCCG---------------UCGC---CCCCUGAGUGGAAUAAUCAAUUUCGAGGAUCAUAAACAACUUUUAAUGAAGUUGUUAAGUGCCAGCAGCUAGUU-------- ......((((..(---------------.(((---..((((((..((....))...))).)))......(((((((((....)))))))))..))))..))))......-------- ( -19.10) >DroMoj_CAF1 164432 102 - 1 ----GUCUGCUGCUGCGUCUGGGGACGCUUUA---CGUAUGAGUGGAAUAAUCAAUUUCGAGGAUCAUAAACAACUUUUAAUGAAGUUGUUAAGUGCCAGCAGCUAGUU-------- ----....(((((((((((....)))))..((---(.(((((.((((((.....))))))....)))))(((((((((....)))))))))..)))..)))))).....-------- ( -33.00) >DroAna_CAF1 115306 110 - 1 ----CGCUGCCCACCCUUUUGGGGGGGAUCCU---CAUAUGAGUGGAAUAAUCAAUUUCGAGGAUCAUAAACAACUUUUAAUGAAGUUGUUAAGUGCCAGCAGCUAGUUGGCCGGCU ----.(((((((.(((....))))))((((((---(((....))(((((.....))))))))))))...(((((((((....)))))))))....((((((.....)))))))))). ( -42.20) >consensus ____CCCUGCCCG_______________UCCA___CCUAUGAGUGGAAUAAUCAAUUUCGAGGAUCAUAAACAACUUUUAAUGAAGUUGUUAAGUGCCAGCAGCUAGUU________ ......((((.................................((((((.....)))))).((......(((((((((....))))))))).....)).)))).............. (-15.59 = -15.62 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:25 2006