Locus 2226

Sequence ID 3R_DroMel_CAF1
Location 6,342,103 – 6,342,209
Length 106
Max. P 0.814828
window3616

overview

Window 6

Location 6,342,103 – 6,342,209
Length 106
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 86.24
Mean single sequence MFE -26.20
Consensus MFE -17.48
Energy contribution -15.52
Covariance contribution -1.96
Combinations/Pair 1.54
Mean z-score -2.43
Structure conservation index 0.67
SVM decision value 0.66
SVM RNA-class probability 0.814828
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6342103 106 - 27905053
-UUAGAAUACUAU-UUGUAAGGUUGCCGUAUACGGCUGAUUUAUAUUUUGGCUUAUAUAACCUUCCCUCUGCAGGCAUUAAAUUUCAAAAUAUAUGUUAUUCCCGAAG
-......(((...-..))).((..((((....))))((((.((((((((((..(.((...(((.(.....).)))...)).)..)))))))))).))))...)).... ( -17.60)
>DroSec_CAF1 106860 105 - 1
-UUAGAAUACUAU-AUGUAAGGUUAC-UUAUACAGCUGAUUUAUAUUUCGGCUUGUAUAACCUUCCCUCUGCAGGCAUUAAAUAUCAAAAUAUAUGUUAUUCCCGAAG
-...(((((.(((-(((((((((...-.(((((((((((........))))).))))))))))).(((....)))..............))))))).)))))...... ( -23.20)
>DroSim_CAF1 120431 105 - 1
-UUAGAAUACUAU-UUGUGAGGUUAC-GUAUACGGCUGAUUUAUAUUUCGGCUUAUAUAACCUUCCCUCUGCAGGCAUUAAAUAUCAAAAUAUAUGUUAUUCCCGAAG
-...(((((.(((-.((((((((((.-.((...((((((........))))))))..))))))).(((....)))..............))).))).)))))...... ( -19.30)
>DroEre_CAF1 118069 104 - 1
UU-GGGAUGCCAGCUAGUGGGGUUAC-GCAUACAGCUGAUUUAUAUUUCGGCUU--GUAGCCCCACUUCUGCAGGCAUUAAAUAUCAAAAUAUAUGCUAUUCCCGAAG
((-((((((((.((.(((((((((((-(.....((((((........)))))))--)))))))))))...)).))))....((((....)))).......)))))).. ( -42.00)
>DroYak_CAF1 107553 107 - 1
UUUAGAAUACUCCCUAGUAAGGUUAC-GUGUACUGCUGAUUUAUAUUUCGGCUUAUGUAACCUUGCUUCUGCAGGCAUUAAAUAUCAAAAUAUAUGCUAUUCCCGAAG
....((((((((...(((((((((((-(((....(((((........))))).))))))))))))))...).))((((...((((....)))))))))))))...... ( -28.90)
>consensus
_UUAGAAUACUAU_UUGUAAGGUUAC_GUAUACAGCUGAUUUAUAUUUCGGCUUAUAUAACCUUCCCUCUGCAGGCAUUAAAUAUCAAAAUAUAUGUUAUUCCCGAAG
....(((((.........(((((((...((((.((((((........)))))))))))))))))..........((((...............)))))))))...... (-17.48 = -15.52 +  -1.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:20 2006