Locus 2220

Sequence ID 3R_DroMel_CAF1
Location 6,333,041 – 6,333,141
Length 100
Max. P 0.574807
window3604

overview

Window 4

Location 6,333,041 – 6,333,141
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 96.20
Mean single sequence MFE -35.60
Consensus MFE -34.16
Energy contribution -33.96
Covariance contribution -0.20
Combinations/Pair 1.07
Mean z-score -1.08
Structure conservation index 0.96
SVM decision value 0.08
SVM RNA-class probability 0.574807
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6333041 100 + 27905053
UUGGCGCUGGUCUAAGGGUUCCGCAGUGUGUUAAAGUUGGGCUUGAGUUCGAGGGCCAGCCAACUGACAGCUGGCAAAUUGCGAACGGACCCACGUCAGU
((((((..(((((....((((.(((((.........((((((....))))))..((((((.........))))))..))))))))))))))..)))))). ( -35.80)
>DroSec_CAF1 97851 100 + 1
UUGGCGCUGGUCUAAGGGUUCCGCAGUGAGUUAAAGUUGGGCUUGAGUUCGAGGGCCAGCCAACUGACAGCUGGCAAAUUGCGAACGGACCCACGUCAGU
((((((..(((((....((((.(((((.........((((((....))))))..((((((.........))))))..))))))))))))))..)))))). ( -35.80)
>DroSim_CAF1 111411 100 + 1
UUGGCGCUGGUCUAAGGGUUCCGCAGUGAGUUAAAGUUGGGCUUGAGUUCGAGGGCCAGCCAACUGACAGCUGGCAAAUUGCGAACGGACCCACGUCAGU
((((((..(((((....((((.(((((.........((((((....))))))..((((((.........))))))..))))))))))))))..)))))). ( -35.80)
>DroEre_CAF1 108963 100 + 1
UUGGCGCUGCUCUAAGGGUUCCACAUUCAGUUAAAGUUGGGCUCGAGUUCGAGGGCCAGCCAACUGACAGCUGGCAAAUUGCGAACGGACCCACGUCAGU
((((((((......))((.(((.....(((((..((((((((((........))))...))))))...)))))((.....))....))).)).)))))). ( -30.50)
>DroYak_CAF1 98274 100 + 1
UUGGCGCUGGUCUAAGGGUUCCACCUUCAGUUGAAGUUGGGCUUGAGUUCGAGGGCCAGCCAACUGACAGCUGGCAAAUUGCGAACGGACCCACGUCAGU
((((((..(((((..((((.(((.((((....)))).)))))))..(((((...((((((.........))))))......))))))))))..)))))). ( -40.10)
>consensus
UUGGCGCUGGUCUAAGGGUUCCGCAGUGAGUUAAAGUUGGGCUUGAGUUCGAGGGCCAGCCAACUGACAGCUGGCAAAUUGCGAACGGACCCACGUCAGU
((((((..(((((..((((((.((...........)).))))))..(((((...((((((.........))))))......))))))))))..)))))). (-34.16 = -33.96 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:09 2006