Locus 222

Sequence ID 3R_DroMel_CAF1
Location 888,642 – 888,744
Length 102
Max. P 0.573806
window401

overview

Window 1

Location 888,642 – 888,744
Length 102
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 77.92
Mean single sequence MFE -28.50
Consensus MFE -18.26
Energy contribution -17.93
Covariance contribution -0.33
Combinations/Pair 1.11
Mean z-score -1.57
Structure conservation index 0.64
SVM decision value 0.08
SVM RNA-class probability 0.573806
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 888642 102 - 27905053
UGGCGCGACAUUUAAGCCCUUUUAAUGAAAAUUAAUGCGGCUUAGUUGC--GGGCCCCUGCACCCUGU---GUUUAACCCCCUGCUGCCCCGCCCCUCUUCCACCGC
.((((((((...((((((...(((((....)))))...)))))))))))--((((....(((....((---.....))....))).)))).)))............. ( -31.00)
>DroPse_CAF1 64324 103 - 1
UGGCGCGACAUUUAAGCCCUUUUAAUGAAAAUUAAUGCGGCUUAGUUUCUCUGGACUCUGGACUUUGG---ACUGGACUCUCU-CCGCGGCGCCCCCUUUGUGUCUC
.(((((((...(((((((...(((((....)))))...)))))))..))...(((.((..(.......---.)..)).)))..-.....)))))............. ( -27.10)
>DroPer_CAF1 64201 106 - 1
UGGCGCGACAUUUAAGCCCUUUUAAUGAAAAUUAAUGCGGCUUAGUUUCUCUGGACUCUGGACUCUGUCCACCCGCUCUCUCU-CCACGGCGCUCCCUUUGUGUCUC
.(((((((...(((((((...(((((....)))))...))))))).......(((...(((((...)))))..((((......-....)))).)))..))))))).. ( -27.40)
>consensus
UGGCGCGACAUUUAAGCCCUUUUAAUGAAAAUUAAUGCGGCUUAGUUUCUCUGGACUCUGGACUCUGU___ACUGAACUCUCU_CCGCGGCGCCCCCUUUGUGUCUC
.(((((.....(((((((...(((((....)))))...)))))))..((....))..................................)))))............. (-18.26 = -17.93 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:03 2006