Locus 2219

Sequence ID 3R_DroMel_CAF1
Location 6,332,528 – 6,332,621
Length 93
Max. P 0.703966
window3603

overview

Window 3

Location 6,332,528 – 6,332,621
Length 93
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 89.30
Mean single sequence MFE -28.00
Consensus MFE -22.15
Energy contribution -22.40
Covariance contribution 0.25
Combinations/Pair 1.15
Mean z-score -2.56
Structure conservation index 0.79
SVM decision value 0.36
SVM RNA-class probability 0.703966
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6332528 93 - 27905053
UUUUAACAGUGCUGCUCCA------AAUACCAUGGCAUUCUCUACUUCAUUGGGUUGUUAUUU-UUUGGCAGGCACUGCUAAUGCCAAUCGAGUGGCACC-
..(((.(((((((...(((------((....((((((..(((.........))).))))))..-)))))..))))))).)))(((((......)))))..- ( -27.50)
>DroSec_CAF1 97345 94 - 1
UUUUAACAGUGCUGCUCCA------AAUACCAUGGCAUUCUCUACUUCAUUGGGUUGUUAUUUUUUUGGCAGGCACUGCUAAUGCCAAUCGAGUGGCACC-
..(((.(((((((...(((------((....((((((..(((.........))).))))))...)))))..))))))).)))(((((......)))))..- ( -27.80)
>DroSim_CAF1 110906 94 - 1
UUUUAACAGUGCUGCUCCA------AAUACCAUGGCAUUCUCUACUUCAUUGGGUUGUUAUUUUUUUGGCAGGCACUGCUAAUGCCAAUCGAGUGGCACC-
..(((.(((((((...(((------((....((((((..(((.........))).))))))...)))))..))))))).)))(((((......)))))..- ( -27.80)
>DroEre_CAF1 108468 94 - 1
UUCUUACAGUGCUGCUCCA------AAUACCAUCGCAUUCUCCACCUCAUUGGGCUGUUAUUU-UUUGGCAGGCGCUGCUAAUGCCAAUCGAGUGGCACCC
........((((..(((..------........(((....((((......))))((((((...-..)))))))))..((....)).....)))..)))).. ( -25.10)
>DroYak_CAF1 97706 93 - 1
UUUUUGCAGUGCUGCUUCA------AAUACCAUCGUAUUCUCCACUUCAUUGGGUUGUUAUUU-UUUGGCAGGCGCUGCUAAUGCCAAUCGAGUGGCACC-
.....(((((((((((..(------((((.((........((((......)))).)).)))))-...)))).)))))))...(((((......)))))..- ( -25.90)
>DroAna_CAF1 100042 99 - 1
UUUUUGCAGUGCAUCUCCAGGAGUGAAGACCAGGAUAUUCUCCACUUCAUUGGUUCGUUAUUU-UUUGGCAGGCGCUGCUAAUGCCACUCGAGUGGCACC-
.....(((((((....((((((((((.((((((((...........)).))))))..))).))-)))))...)))))))...((((((....))))))..- ( -33.90)
>consensus
UUUUAACAGUGCUGCUCCA______AAUACCAUGGCAUUCUCCACUUCAUUGGGUUGUUAUUU_UUUGGCAGGCACUGCUAAUGCCAAUCGAGUGGCACC_
........((((..(((..............((((((...((((......)))).))))))....(((((((((...)))..))))))..)))..)))).. (-22.15 = -22.40 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:08 2006