Locus 2217

Sequence ID 3R_DroMel_CAF1
Location 6,324,730 – 6,324,843
Length 113
Max. P 0.739343
window3601

overview

Window 1

Location 6,324,730 – 6,324,843
Length 113
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 79.52
Mean single sequence MFE -28.75
Consensus MFE -21.39
Energy contribution -21.17
Covariance contribution -0.22
Combinations/Pair 1.10
Mean z-score -1.33
Structure conservation index 0.74
SVM decision value 0.45
SVM RNA-class probability 0.739343
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6324730 113 + 27905053
UGCUGCUGCUGUAAUGUGUCCUUGGGGCGUCGUUUAAUUGCUUUUACCAAUUUGAUUUUCAAGUGCCAUUAAGCCGGGCACGCCCCACAUGCCACGCCCGCCGUUC-----CUGCCAC
.((.(..((.((..((((.(..((((((((.((((....((((......(((((.....)))))......)))).))))))))))))...).))))...)).))..-----).))... ( -29.40)
>DroPse_CAF1 86947 118 + 1
UGUUGUUGUUGUAAUGUGUCCUUGGGGCGUCGUUUAAUUGCUUUUACCAAUUUGAUUUUCAAGUGCCAUUAAGCCAGGCACGCCCCACAUGCCACAGUAGCAGCACCCCCCCUACCGC
((((((((((((..(((((....(((((((.((((....((((......(((((.....)))))......)))).))))))))))))))))..))))))))))))............. ( -35.20)
>DroGri_CAF1 114790 112 + 1
GCUCGCUGUUGUAAUGUGUCCUUGGGGCGUCAUUUAAUUGCUUUUACCAAUUUGAUUUUCAAGUGCCAUUAAGCCUGGCACGCCUCCGUUCCCCCG-CACCCGCCU-----CUGCCAC
....((.(..((..((((....((((((((((...(((((.......)))))))))......((((((.......))))))))).)))......))-))...))..-----).))... ( -24.30)
>DroWil_CAF1 174463 100 + 1
UGUUGUUGUUGUAAUGUGUCCUUGGGGCGUCAUUUAAUUGCUUUUACCAAUUUGAUUUUCAAGUGCCAUUAAGCCAGGCACGCCCCAA-GCCCAUAC-----------------CCAC
..............((((..((((((((((((...(((((.......)))))))))......(((((.........))))))))))))-)..)))).-----------------.... ( -30.00)
>DroMoj_CAF1 137349 99 + 1
UGGCGCUGCUGUAAUGUGUCCUUGGGGCGUCAUUUAAUUGCUUUUACCAAUUUGAUUUUCAAGUGCCAUUAAGCUCGGCACGCCCCACCGCCCAA-------------------CCAC
.((((..((......)).....((((((((((...(((((.......)))))))))......(((((.........))))))))))).))))...-------------------.... ( -27.90)
>DroAna_CAF1 93283 93 + 1
UGCUGUUGCUGUAAUGUGUCCUUGGGGCGUCGUUUAAUUGCUUUUACCAAUUUGAUUUUCAAGUGCCAUUAAGCCAGGCACGCCCCACAUGCG-------------------------
.((....))......((((...((((((((.((((....((((......(((((.....)))))......)))).)))))))))))).)))).------------------------- ( -25.70)
>consensus
UGUUGCUGCUGUAAUGUGUCCUUGGGGCGUCAUUUAAUUGCUUUUACCAAUUUGAUUUUCAAGUGCCAUUAAGCCAGGCACGCCCCACAUCCCAC___________________CCAC
......................((((((((((...(((((.......)))))))))......(((((.........)))))))))))............................... (-21.39 = -21.17 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:06 2006