Locus 2216

Sequence ID 3R_DroMel_CAF1
Location 6,324,119 – 6,324,223
Length 104
Max. P 0.596755
window3600

overview

Window 0

Location 6,324,119 – 6,324,223
Length 104
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 75.65
Mean single sequence MFE -36.23
Consensus MFE -20.99
Energy contribution -21.83
Covariance contribution 0.83
Combinations/Pair 1.13
Mean z-score -1.48
Structure conservation index 0.58
SVM decision value 0.13
SVM RNA-class probability 0.596755
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6324119 104 + 27905053
GGAAAGGAUCUGUCAGCUGCAGGACAACGAGAUGCGAGCCUGCAAUUGACGGACGCAUUGUGCGGCGGACUGUU-UUAGGACUCAGCCAACAAAGGCGCCAGUGC
........((((((((.((((((....((.....))..)))))).)))))))).((((((.((((.(..(((..-.)))..))).(((......))))))))))) ( -37.20)
>DroVir_CAF1 94792 92 + 1
------AAGCUGUCAUCUGCAGCGAUUUGCGAUG-UGGCCUGCAAUUGACGAGCGCAUUGUGCGGCG-ACUGUUUUUAGGACUC-GCCAACAAAGCGAC----CG
------..(((((((..((((((.((.......)-).).)))))..)))).)))((.((((..((((-(..(((.....)))))-))).)))).))...----.. ( -32.30)
>DroPse_CAF1 86491 102 + 1
-GAAAGGAGCUGUCAGCGGCAGGCCGGCGAGAUGUGUGUCUGCAAUUGACGGACGCAUUGUGCGGCGG-CUGUU-UUAGGACUGAGCCAACAAAGGAGCUUACAC
-.....((((((((...(((((.(((.((....((((((((((....).)))))))))....)).)))-)))))-....)))....((......))))))).... ( -36.80)
>DroMoj_CAF1 136959 92 + 1
------UAGCUGUCAUCUGCAGUGCGAGGCGAGC-UGGCCUGCAAUUGACAGGCGCAUUGUGCGGCA-ACUGUUUUUAGGACUC-GCCAACAAAGCGAG----CG
------...((((((..(((((.((.((.....)-).)))))))..)))))).(((.((((..(((.-...(((.....)))..-))).)))).)))..----.. ( -35.10)
>DroAna_CAF1 92756 104 + 1
GGCAAGGAUCUGUCAACUGCAGGCGAACGAGAGCCGAGCCUGCAAUUGACGGACGCAUUGUGCGGCGGACUGUU-UUAGGACUCAGCCAACAAAGGCGUUUGUGC
.(((((..((((((((.(((((((...(....)....))))))).))))))))(((.((((..(((.((..(((-....))))).))).))))..)))))))).. ( -40.30)
>DroPer_CAF1 92770 101 + 1
-GAAAGGAGCUGUCAGCGGCAGGCCGGCGAGAUGUGUGUCUGCAAUUGACGGACGCAUUGUGCGGCGG-CUGUU-UUAGGACUGAGCCAACAAAGGAGC-UACAC
-....(.(((((((...(((((.(((.((....((((((((((....).)))))))))....)).)))-)))))-....)))....((......)))))-).).. ( -35.70)
>consensus
_GAAAGGAGCUGUCAGCUGCAGGCCGACGAGAUG_GAGCCUGCAAUUGACGGACGCAUUGUGCGGCGGACUGUU_UUAGGACUCAGCCAACAAAGGAGC_U__AC
.........(((((((.((((((...............)))))).))))))).....((((..(((.....(((.....)))...))).))))............ (-20.99 = -21.83 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:05 2006