Locus 2213

Sequence ID 3R_DroMel_CAF1
Location 6,318,052 – 6,318,156
Length 104
Max. P 0.500000
window3594

overview

Window 4

Location 6,318,052 – 6,318,156
Length 104
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 86.81
Mean single sequence MFE -22.25
Consensus MFE -18.16
Energy contribution -18.38
Covariance contribution 0.22
Combinations/Pair 1.04
Mean z-score -1.67
Structure conservation index 0.82
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6318052 104 - 27905053
UGUU---GAUGAAAUAAAAUCCGCCUUUUGUGCAUUUAAUUUUUAGAAUGCCCCAGACAAAAGCGCAGGCAACAACAAAGGGCGUAU-CC--AAAAAU-UAAACGCAA--------ACA-
.((.---(((........))).))......(((.((((((((((.((((((((.........((....)).........)))))).)-).--))))))-)))).))).--------...- ( -22.57)
>DroVir_CAF1 88494 98 - 1
UGUU---GAUGAAAUAAAAUCCGCCUUUUGUGCAUUUAAUUUUUAGAAUGC--CAAACA-AAGCGCAGGCAACAACAAAGGGCGUAC-C-----AAAU-AUAACGCAA--------GCG-
.(((---(((........)))((((((((((((((((........))))))--......-..((....))....))))))))))...-.-----....-........)--------)).- ( -21.30)
>DroGri_CAF1 107635 98 - 1
UGUU---GAUGAAAUAAAAUCCGCCUUUUGUGCAUUUAAUUUUUAGAAUGC--CAAACA-AAGCGCAGGCAACAACAAAGGGCGUAC-C-----AAAU-AUAACGCAA--------GCG-
.(((---(((........)))((((((((((((((((........))))))--......-..((....))....))))))))))...-.-----....-........)--------)).- ( -21.30)
>DroWil_CAF1 167260 117 - 1
UGUUGCUGAUGAAAUAAAAUCCGCCUUUUGUGCAUUUAAUUUUUAGAAUGC-UCAAACAAAGGGACAGGCAACAACAAAGGGCGUAC-CCCAAAAAAU-AUAACGCAAUGCCGGCAACAG
((((((((............(((((((((((((((((........))))))-....)))))))).).(....)......))((((..-..........-...)))).....)))))))). ( -31.06)
>DroMoj_CAF1 130578 98 - 1
UGUU---GAUGAAAUAAAAUCCGCCUUUUGUGCAUUUAAUUUUUAGAAUGG--CAAACA-AAGCGCUGGCAACAACAAAGGGCGUAC-C-----AAAU-AUAACGCAA--------GCG-
.(((---(((........)))((((((((((.(((((........)))))(--(.....-..))..((....))))))))))))...-.-----....-........)--------)).- ( -19.40)
>DroPer_CAF1 85279 105 - 1
UGUU---GAUGAAAUAAAAUCCGCCUUUUGUGCAUUUAAUUUUUAGAAUUU-CCAGACAAAAGCGCAGGCAACAACAAAGGGCGUAUACC--AAAAAUGUUAACGCAA--------ACA-
.(((---(((...........((((((((((((..................-..........))...(....).))))))))))......--......))))))....--------...- ( -17.89)
>consensus
UGUU___GAUGAAAUAAAAUCCGCCUUUUGUGCAUUUAAUUUUUAGAAUGC__CAAACA_AAGCGCAGGCAACAACAAAGGGCGUAC_C_____AAAU_AUAACGCAA________ACA_
(((....(((........)))((((((((((((((((........))))))................(....).))))))))))....................)))............. (-18.16 = -18.38 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:00 2006