Locus 2211

Sequence ID 3R_DroMel_CAF1
Location 6,311,114 – 6,311,205
Length 91
Max. P 0.791373
window3590

overview

Window 0

Location 6,311,114 – 6,311,205
Length 91
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 81.38
Mean single sequence MFE -23.40
Consensus MFE -17.06
Energy contribution -17.06
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.81
Structure conservation index 0.73
SVM decision value 0.59
SVM RNA-class probability 0.791373
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6311114 91 - 27905053
AGCUGGCGCAUAUGCUGCCGCCCCCACACCAC---------ACCACCACCACUGAGGAAGCCACUGCUACACUUUCCACAACCAAUUUGGUGGUGCAGGA
.((.(((((....)).))))).......((.(---------(((((((((.....)).(((....)))...................))))))))..)). ( -25.60)
>DroSec_CAF1 75976 88 - 1
AGCUGGCGCAUAUGCUGCCGCCCCCACACCAC---------ACCACCACAUCC---UUAGCCACUGCUACACUUUCCACAACCAAUUUGGUGGUGCAGGA
.((.(((((....)).))))).((..((((((---------............---.((((....)))).........(((.....)))))))))..)). ( -22.20)
>DroSim_CAF1 81789 88 - 1
AGCUGGCGCAUAUGCUGCCGCCCCCACACCAC---------ACCACCACAUCC---UCAGCCACUGCUACACUUUCCACAACCAAUUUGGUGGUGCAGGA
.((.(((((....)).))))).((..((((((---------............---..(((....)))..........(((.....)))))))))..)). ( -21.20)
>DroEre_CAF1 83562 88 - 1
AGCCGGCGCACAUGCUGCCGCCCCCACUCCAGCACAUCCAC---------UGU---GCUACCACUGCUACACUUUCCACAGCCAAUUUGGUGGUGCAGGA
..(((((((....)).)))(((((((....((((((.....---------)))---)))......(((...........))).....))).)).)).)). ( -24.60)
>consensus
AGCUGGCGCAUAUGCUGCCGCCCCCACACCAC_________ACCACCACAUCC___GCAGCCACUGCUACACUUUCCACAACCAAUUUGGUGGUGCAGGA
.((.(((((....)).)))))..........................................((((..((((...............))))..)))).. (-17.06 = -17.06 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:56 2006