| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,304,223 – 6,304,317 |
| Length | 94 |
| Max. P | 0.696557 |
| Location | 6,304,223 – 6,304,317 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 79.28 |
| Mean single sequence MFE | -37.52 |
| Consensus MFE | -24.42 |
| Energy contribution | -25.54 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.696557 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6304223 94 + 27905053 GCACCAGUUGACAUUGUUGAGGGAGCA------------GGAGCCUGCU----GUCCCUCGUUUGGGGCACCUCCUCAAGCCAUCAGUUUGGAUGUUGGCCUCGUGUUCU- ((((..((..(((((...(((((((((------------(....)))).----.))))))((((((((.....))))))))..........)))))..))...))))...- ( -38.00) >DroSec_CAF1 69233 95 + 1 GCACCAGUUGACAUAGUUGAGGGAGCA------------GGAGCCUGCU----CUCCCUCGUUUGGGGCACCUCCUCAAGCCAUCAGUUUGGAUGUUGGCCUCGUGUUCUU ((((..((..((((..(((((((((((------------(....)))))----)((((......)))).....)))))).(((......)))))))..))...)))).... ( -36.80) >DroSim_CAF1 75011 95 + 1 GCACCAGUUGACAUUGUUGAGGGAGCA------------GGAGCCUGCU----GUCCCUCGUUUGGGGCACCUCCUCAAGCCAUCAGUUUGGAUGUUGGCCUCGUGUUCUU ((((..((..(((((...(((((((((------------(....)))).----.))))))((((((((.....))))))))..........)))))..))...)))).... ( -38.00) >DroEre_CAF1 76967 105 + 1 GCACCAGUUGACAUUGUUGAGGGAGCAGGAGCAGGAGCAGGAGCCUGCU----GCCCCUCGUUUGGGGCACCUCCUCCAGCCAUCGGCUUGGAUGUUGGCCUCGUGUUG-- ((((..((..((((((((((..(.((.((((.((((((((....)))))----(((((......))))).))).)))).))).)))))...)))))..))...))))..-- ( -48.20) >DroYak_CAF1 68146 93 + 1 GCACCAGUUGACAUUGUUGAGGGAGCC------------AGAGCCUGCU----GUCCCCCGGUUGGGGCACCUCCUCAAGCCAUCAGUUUGGAUGUUGGCCUCGUGUUU-- ((((..((..(((((...((((..(((------------..((((....----.......))))..))).))))..(((((.....))))))))))..))...))))..-- ( -30.40) >DroAna_CAF1 72701 107 + 1 GCACCAGUUGACAUUGUUGGGGGAUCCGCUUCGUU--C-CGAUCCGUCCGUCCGCCCCCUUCUUGAGGCGGCGCCCCAAUCCUUUAGAAUGGAUGUUGGGCGCUAGUUU-U ((..(((..(((...)))(((((...((...((..--.-.....))..))....)))))...)))..))(((((((..((((........))))...))))))).....-. ( -33.70) >consensus GCACCAGUUGACAUUGUUGAGGGAGCA____________GGAGCCUGCU____GUCCCUCGUUUGGGGCACCUCCUCAAGCCAUCAGUUUGGAUGUUGGCCUCGUGUUC__ ((((..((..((((..((((((.((((..................))))....(((((......)))))....)))))).(((......)))))))..))...)))).... (-24.42 = -25.54 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:52 2006