Locus 2207

Sequence ID 3R_DroMel_CAF1
Location 6,297,023 – 6,297,122
Length 99
Max. P 0.574635
window3584

overview

Window 4

Location 6,297,023 – 6,297,122
Length 99
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 77.75
Mean single sequence MFE -32.97
Consensus MFE -19.67
Energy contribution -19.70
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -1.48
Structure conservation index 0.60
SVM decision value 0.08
SVM RNA-class probability 0.574635
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6297023 99 - 27905053
GGUUUUGCUUAUGAGUGGUACAAAUGUUUUAGGCCACAAUUGGAGCACUUCUGUUUGACAGUGCGUAUGAUUUAUG--CGCCUGCUGUU----------GCAGCUACAUCU--------
.....(((((....(((((..((.....))..))))).....)))))...((((..(((((((((((((...))))--)))..))))))----------))))........-------- ( -26.10)
>DroVir_CAF1 66852 102 - 1
G-C----CUCAUGAGUUGUACAAAUGUUUUGGGCCACAAUUGGAGCACUUCUGUUUGACAGUGCGUAUGAUUUAUGUGUGCCGGCUGUUUGUUGCUC----AGUGGAAGCU--------
(-(----.((.(((((...(((((((((...(((((((((((..(((((((.....)).)))))...))))...)))).)))))).)))))).))))----)...)).)).-------- ( -30.90)
>DroPse_CAF1 60162 116 - 1
GGGC-CGCUCAUGAGUUGUACAAAUGUUUUAGGCCACAAUUGGAGCACUUCUGUUUGACAGUGCGUAUGAUUUAUG--UGCCUGCUGUUUGUCGUUGGUGUAACUGCCUCUGCUCCAGC
.(((-.((.(((((((..(((............(((....))).(((((((.....)).))))))))..)))))))--.))..))).......(((((.(((........))).))))) ( -34.90)
>DroWil_CAF1 143452 115 - 1
UGGUUGGACCAUGAGUUGUACAAAUGUUUUAGGCCACAAUUGGAGCACUUCUGUUUGACAGUGCGUAUGAUUUAUG--UGCCUGCUGUUUGUCGCUGC--AAACUGCAACUGGUCCGAC
..((((((((((((((..(((............(((....))).(((((((.....)).))))))))..)))))).--....(((.((((((....))--)))).)))...)))))))) ( -39.90)
>DroMoj_CAF1 92591 101 - 1
G-C----CUCAUGAGUUGUACAAAUGUUUUGGGCCACAAUUGGAGCACUUCUGUUUGACAGUGCGUAUGAUUUAUGAGUGCCUGCUGCUUGCUGUUU----GCUGUUAGC---------
(-(----(((((((((..(((............(((....))).(((((((.....)).))))))))..))))))))).))..((((...((.....----))...))))--------- ( -32.30)
>DroPer_CAF1 65348 116 - 1
GGGC-CACUCAUGAGUUGUACAAAUGUUUUAGGCCACAAUUGGAGCACUUCUGUUUGACAGUGCGUAUGAUUUAUG--UGCCUGCUGUUUGUCGUUGGUGUAACUGCCUCUGCUCCAGC
((((-....(((((((..(((............(((....))).(((((((.....)).))))))))..)))))))--.))))..........(((((.(((........))).))))) ( -33.70)
>consensus
GGG___GCUCAUGAGUUGUACAAAUGUUUUAGGCCACAAUUGGAGCACUUCUGUUUGACAGUGCGUAUGAUUUAUG__UGCCUGCUGUUUGUCGUUG____AACUGCAUCU________
.........((((((((((((............(((....))).(((((((.....)).)))))))))))))))))........................................... (-19.67 = -19.70 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:51 2006