Locus 2204

Sequence ID 3R_DroMel_CAF1
Location 6,290,372 – 6,290,470
Length 98
Max. P 0.571449
window3580

overview

Window 0

Location 6,290,372 – 6,290,470
Length 98
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 77.09
Mean single sequence MFE -23.73
Consensus MFE -15.71
Energy contribution -15.60
Covariance contribution -0.11
Combinations/Pair 1.09
Mean z-score -1.17
Structure conservation index 0.66
SVM decision value 0.08
SVM RNA-class probability 0.571449
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6290372 98 + 27905053
GCAGUUAUUAGGUUGUUAGUGGCAUAGUCCCUGCCAUUCUCAUCGAUUUAUGCACUUCACGGCAUCUCGUAAUGUGGGUU--UUUU----C-GCCU-UCCUUCCCU-------
.........((((((..(((((((.......)))))))..))..((...((.(((...((((....))))...))).)).--...)----)-))))-.........------- ( -19.00)
>DroVir_CAF1 58571 81 + 1
GCAGUUAUUAGGUUGUUAGUGGCAUAGUCUCUGCCAUUUUCAUCGAUUUAUGCACUUCAAAGCAUC---UAAUGUGGGUU--UUUU---------------------------
((...(((((((.((..(((((((.......)))))))..)).).....((((........)))))---)))))...)).--....--------------------------- ( -16.50)
>DroPse_CAF1 52584 106 + 1
GCAGUUAUUAGGUUGUUAGUGGCAUAGUCCAUGCCAUUUUCAUCGAUUUAUGCACUUCACAGCAUCUCGUAAUGUGGGUU--UUUU----C-GAACGUACUCGUACGAGUACU
(((...(((.(((.(..((((((((.....))))))))..)))))))...)))............((((((..(((.(((--(...----.-)))).)))...)))))).... ( -28.20)
>DroWil_CAF1 135958 94 + 1
GCAGUUAUUAGGUUGUUAGUGGCAUAGUCCAUGCCAUUUUCAUCGAUUUAUGCACUUCACAGCAUCU---AAUGUGGUUGCUCUUG----G-GCCA-UCCCCA----------
((((.(((((((.((..((((((((.....))))))))..)).).....((((........))))))---))))...))))...((----(-(...-..))))---------- ( -24.10)
>DroMoj_CAF1 83339 104 + 1
GCAGUUAUUAGGUUGUUAGUGGCGUAGUCUCUGCCAUUUCCAUCGAUUUAUGCACUUCACAGCAUC---UAAUGUGGCGU--UCUUUUUUCAGUGU-UCUCUGCU-CAG--CU
((((....(((((((..(((((((.......))))))).....))))))).((((((((((.....---...)))))...--.........)))))-...)))).-...--.. ( -21.30)
>DroPer_CAF1 57730 106 + 1
GCAGUUAUUAGGUUGUUAGUGGCAUAGUCCAUGCCAUUUUCAUCGAUUUAUGCACUUCACAGCAUCUCGUAAUGUGGGUU--UUUU----C-GAACGUACUCGUACGAGUGCU
(((...(((.(((.(..((((((((.....))))))))..)))))))...))).......((((.((((((..(((.(((--(...----.-)))).)))...)))))))))) ( -33.30)
>consensus
GCAGUUAUUAGGUUGUUAGUGGCAUAGUCCAUGCCAUUUUCAUCGAUUUAUGCACUUCACAGCAUCU__UAAUGUGGGUU__UUUU____C_GAAC_UCCUCG__________
(((...(((.(((.(..(((((((.......)))))))..)))))))...)))...(((((...........))))).................................... (-15.71 = -15.60 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:47 2006