Locus 2202

Sequence ID 3R_DroMel_CAF1
Location 6,286,338 – 6,286,432
Length 94
Max. P 0.873663
window3578

overview

Window 8

Location 6,286,338 – 6,286,432
Length 94
Sequences 4
Columns 94
Reading direction reverse
Mean pairwise identity 80.11
Mean single sequence MFE -16.95
Consensus MFE -12.95
Energy contribution -13.32
Covariance contribution 0.38
Combinations/Pair 1.14
Mean z-score -1.86
Structure conservation index 0.76
SVM decision value 0.88
SVM RNA-class probability 0.873663
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6286338 94 - 27905053
UUGAAACUCCCUGUCAUUUUCGCCAUUACUUGGAAACCAAAAAGUGGUGAAACGAGCCAGCAAAACUAUAUAUAAAAUGCAAAUAUAUAAAUAG
..........(((.(..((((((((((..((((...))))..))))))))))...).)))......(((((((.........)))))))..... ( -16.70)
>DroSec_CAF1 51417 94 - 1
UUGAAACUCCCUGUCAUUUUCGCCUUUAUUUGGAAACCAAAAAGUGGUGAAACGAGUUAGUAAAAUUAUAUAUAUAAUGCAAAUAUAUAAAUAG
....(((((........(((((((.((.(((((...))))).)).))))))).))))).......((((((((.........)))))))).... ( -15.50)
>DroEre_CAF1 56984 82 - 1
UAGA-ACUCUCUGUCAGUUUCGCCAUUAUUCGGAAACCAAAAAGUGGUGAGCCCAGC-----------UAUAUAAAAUGCAAAUAUAUAAAUAC
((((-....)))).....(((((((((....(....).....)))))))))....((-----------..........)).............. ( -12.00)
>DroYak_CAF1 53787 83 - 1
UGGAAACUCUCUGUCAGAUUCGCCAUUAUUUGGAAACCAAAAAGUGGCGAACCGAGA-----------UACAUAAAAUGCAAAUGCAUAAAUAU
.(....)((((.((.....((((((((.(((((...))))).)))))))))).))))-----------........((((....))))...... ( -23.60)
>consensus
UUGAAACUCCCUGUCAGUUUCGCCAUUAUUUGGAAACCAAAAAGUGGUGAAACGAGC___________UAUAUAAAAUGCAAAUAUAUAAAUAG
..................(((((((((.(((((...))))).)))))))))........................................... (-12.95 = -13.32 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:45 2006