Locus 2200

Sequence ID 3R_DroMel_CAF1
Location 6,285,757 – 6,285,851
Length 94
Max. P 0.868007
window3576

overview

Window 6

Location 6,285,757 – 6,285,851
Length 94
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 87.82
Mean single sequence MFE -37.08
Consensus MFE -26.34
Energy contribution -27.30
Covariance contribution 0.96
Combinations/Pair 1.04
Mean z-score -2.42
Structure conservation index 0.71
SVM decision value 0.86
SVM RNA-class probability 0.868007
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6285757 94 - 27905053
GCAACUGGCAACGUGCGGCAUUUGCAACUGGUGCAGCGAUAUUGCGG----------UGCAGCUUGGCUCUUAUGAGCAGCAAAUGCAGCGCGACUAAUGCGCC
(((..(((...(((((.((((((((....(.((((.((......)).----------)))).)...((((....)))).)))))))).))))).))).)))... ( -39.50)
>DroSec_CAF1 50833 91 - 1
---ACUUGCAACGUGCGGCAUUUGCAACUGGUGCAGCAAUAUUGCGG----------UGCAGCUUGGCUCUUAUGAGCAGCAAAUGCAGCGCGACUAAUGCGCC
---....(((.(((((.((((((((....(.(((((((....)))..----------)))).)...((((....)))).)))))))).))))).....)))... ( -35.70)
>DroSim_CAF1 53974 91 - 1
---ACUUGCAACGUGCGGCAUUUGCAACUGGUGCAGCGAUAUUGCGG----------UGCAGCUUGGCUCUUAUGAGCAGCAAAUGCAGCGCGACUAAUGCGCC
---....(((.(((((.((((((((....(.((((.((......)).----------)))).)...((((....)))).)))))))).))))).....)))... ( -38.10)
>DroEre_CAF1 56346 94 - 1
GCAACUGGCAACGUGCGGCAUUUGCAACUGGUGCAGCGAUAUGGCGG----------UGCAACUCGGCUCUUAUGAGCAGCAAAUGCAGCGCGACUAAUGCGCC
(((..(((...(((((.((((((((..(.((((((.((......)).----------))).))).)((((....)))).)))))))).))))).))).)))... ( -38.50)
>DroYak_CAF1 53118 102 - 1
GCCACUGACAACUGGCA--ACUUGCAACUGGUGCAGCGAUAUUGCGGCGCAACUGGGUGCAACUGGGCUCUUAUGAGCAGCAAAUGCAGCGCAACUAAUGCGCC
((((........)))).--..((((..(..((((((.....)))).((((......)))).))..)((((....)))).)))).....(((((.....))))). ( -33.60)
>consensus
GC_ACUGGCAACGUGCGGCAUUUGCAACUGGUGCAGCGAUAUUGCGG__________UGCAGCUUGGCUCUUAUGAGCAGCAAAUGCAGCGCGACUAAUGCGCC
...........(((((.((((((((..(..(((((((......))............))).))..)((((....)))).)))))))).)))))........... (-26.34 = -27.30 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:43 2006