Locus 220

Sequence ID 3R_DroMel_CAF1
Location 885,184 – 885,300
Length 116
Max. P 0.924488
window398

overview

Window 8

Location 885,184 – 885,300
Length 116
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 97.78
Mean single sequence MFE -23.90
Consensus MFE -23.90
Energy contribution -23.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.03
Structure conservation index 1.00
SVM decision value 1.16
SVM RNA-class probability 0.924488
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 885184 116 + 27905053
----GUUGAUUUUGAAAUUUGUAUUCAAGCGUUAAUUGGCUUUGCUCAUUAGCGGGUUUCUUUAAUGCUAUUAACUUUAUUUGCUGUUUAUUUUAUUAGUAAUGCGGCAUUGUGUUUCCU
----((((((..((((.......))))((((((((..(((((.(((....))))))))...))))))))))))))......(((((((((((.....))))).))))))........... ( -23.90)
>DroSec_CAF1 53073 120 + 1
UUUUGUUGAUUUUGAAAUUUGUAUUCAAGCGUUAAUUGGCUUUGCUCAUUAGCGGGUUUCUUUAAUGCUAUUAACUUUAUUUGCUGUUUAUUUUAUUAGUAAUGCGGCAUUGUGUUUCCU
....((((((..((((.......))))((((((((..(((((.(((....))))))))...))))))))))))))......(((((((((((.....))))).))))))........... ( -23.90)
>DroSim_CAF1 52557 120 + 1
UUUUGUUGAUUUUGAAAUUUGUAUUCAAGCGUUAAUUGGCUUUGCUCAUUAGCGGGUUUCUUUAAUGCUAUUAACUUUAUUUGCUGUUUAUUUUAUUAGUAAUGCGGCAUUGUGUUUCCU
....((((((..((((.......))))((((((((..(((((.(((....))))))))...))))))))))))))......(((((((((((.....))))).))))))........... ( -23.90)
>consensus
UUUUGUUGAUUUUGAAAUUUGUAUUCAAGCGUUAAUUGGCUUUGCUCAUUAGCGGGUUUCUUUAAUGCUAUUAACUUUAUUUGCUGUUUAUUUUAUUAGUAAUGCGGCAUUGUGUUUCCU
....((((((..((((.......))))((((((((..(((((.(((....))))))))...))))))))))))))......(((((((((((.....))))).))))))........... (-23.90 = -23.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:00 2006