| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,279,905 – 6,280,005 |
| Length | 100 |
| Max. P | 0.723614 |
| Location | 6,279,905 – 6,280,005 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 81.70 |
| Mean single sequence MFE | -24.94 |
| Consensus MFE | -14.84 |
| Energy contribution | -15.23 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.723614 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6279905 100 + 27905053 AAUGUAUUGAUAAUGCACAUUAUGCGAGUGCAAAAUUAACAGCCAGCAAACU-GGUAAAUGGAAGCCAGACAGUUGGACAUUUGCA--CAUAU-----AGCAUA---CAC--------A ..(((((.....)))))...(((((..(((((((........(((((...((-(((........)))))...)))))...))))))--)....-----.)))))---...--------. ( -25.50) >DroSec_CAF1 45032 100 + 1 AAUGUAUUGAUAAUGCACAUUAUGCGAGUGCAAAAUUAACAGCCAGCAAACU-GGUAAAUGGAAGCCAGACAGUUGGACAUUUGCA--CAUAU-----AGCAUA---CAU--------A .((((((..(((.((((.....)))).(((((((........(((((...((-(((........)))))...)))))...))))))--).)))-----...)))---)))--------. ( -26.30) >DroSim_CAF1 48180 100 + 1 AAUGUAUUGAUAAUGCACAUUAUGCGAGUGCAAAAUUAACAGCCAGCAAACU-GGUAAAUGGAAGCCAGACAGUUGGACAUUUGCA--CAUAU-----AGCAUA---UAU--------A ..(((((.....)))))...(((((..(((((((........(((((...((-(((........)))))...)))))...))))))--)....-----.)))))---...--------. ( -25.60) >DroEre_CAF1 50533 109 + 1 AAUGUAUUGAUAAUGCACAUUAUGCGAGUGCAAAAUUAACAGCCAGCCAACUCGGUAAAUGGAAGCCAGACAGUUGGACAUGUGCA--CAUAU-----AGCAUA---UACUCGUGCUCG ..(((((.....))))).......((((..(..........((((((...((.(((........)))))...))))).)((((((.--.....-----.)))))---)....)..)))) ( -25.30) >DroYak_CAF1 47110 113 + 1 AAUGUAUUGAUAAUGCACAUUAUGCGAGUGCAAAAUUAACAGCCAGCAAACU-GGCAAAUGGAAGCCAGACAGUUGGACAUGUGCACACAUAU-----AGCAUACUAUACUACUAUAUA .(((((.......(((((((..(((....))).........((((((...((-(((........)))))...))))).))))))))....(((-----((....)))))....))))). ( -27.50) >DroPer_CAF1 47218 100 + 1 AAUGUAUUGAUAAUGCAUAUUAUGCGAGUGUAAAAUUAACAGCCA------------AAUGGAAGUCGGACAACCAGACAUUCGGA--CAUUCGGACAACCAGA---CAUUCGGAC--A .((((((.....))))))......(((((((..............------------..(((..(((.((...((........)).--...)).)))..))).)---))))))...--. ( -19.43) >consensus AAUGUAUUGAUAAUGCACAUUAUGCGAGUGCAAAAUUAACAGCCAGCAAACU_GGUAAAUGGAAGCCAGACAGUUGGACAUUUGCA__CAUAU_____AGCAUA___CAC________A .((((.(((((..(((((.........)))))..)))))...............(((((((....((((....)))).)))))))..............))))................ (-14.84 = -15.23 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:42 2006