| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,272,025 – 6,272,117 |
| Length | 92 |
| Max. P | 0.667610 |
| Location | 6,272,025 – 6,272,117 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 81.78 |
| Mean single sequence MFE | -13.28 |
| Consensus MFE | -10.58 |
| Energy contribution | -10.97 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.667610 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6272025 92 - 27905053 UCCUGCUACUUUAUAUCCACUUUAUAUGCUCGCAGGAUGUCCCAAUUACUUUGAGGCACCCACACAUACACAGCUACUCCUCCCUCCCGGUU ((((((.....((((.......)))).....))))))((((.(((.....))).)))).................................. ( -14.40) >DroSec_CAF1 37230 90 - 1 UUCUGCUACUUUAUAUCCACUUUAUAUGCUCGAAGGAUGUCCCAAUUACUUUGAGGCACCCACAC--ACACAGCUACACCUCGCUCCCCGUU (((.((.....((((.......)))).))..)))((.((((.(((.....))).)))).))....--....(((........)))....... ( -10.50) >DroSim_CAF1 40335 90 - 1 UCCUGCUACUUUAUAUCCACUUUAUAUGCUCGCAGGAUGUCCCAAUUACUUUGAGGCACCCACAC--ACACAGCUACACCUCGCUCCCCGUU ((((((.....((((.......)))).....))))))((((.(((.....))).)))).......--....(((........)))....... ( -15.60) >DroEre_CAF1 42890 76 - 1 UCCUGCUACUUUAUAUCCACUUUAUAUGCUCGCAGGAUGUCCCAAUUACUUUGAGGCACCCACAA------ACACACA------GACA---- ((((((.....((((.......)))).....))))))((((.(((.....))).)))).......------.......------....---- ( -14.40) >DroYak_CAF1 39102 79 - 1 UCCUGCUACUUUAUAUCCACUUUAUAUGCUCGCAGGAUGUCCCAAUUACUUUGAGGCACCCACAC------AGCUACC------UCCC-GUG ((((((.....((((.......)))).....))))))((((.(((.....))).)))).......------.......------....-... ( -14.40) >DroAna_CAF1 43636 86 - 1 GCCCGGUAUUUUAUAUCCACUUUAUAUGCUCGCAGGAUGUCCCAAUUAUUUUGAGGCGCACACUU--ACACAC--ACACCUC--UGCUCCUU ((..(((....((((.......))))(((((.(((((((.......))))))).)).))).....--......--..)))..--.))..... ( -10.40) >consensus UCCUGCUACUUUAUAUCCACUUUAUAUGCUCGCAGGAUGUCCCAAUUACUUUGAGGCACCCACAC__ACACAGCUACACCUC__UCCCCGUU ((((((.....((((.......)))).....))))))((((.(((.....))).)))).................................. (-10.58 = -10.97 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:37 2006