Locus 2194

Sequence ID 3R_DroMel_CAF1
Location 6,270,441 – 6,270,537
Length 96
Max. P 0.527720
window3566

overview

Window 6

Location 6,270,441 – 6,270,537
Length 96
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 81.38
Mean single sequence MFE -24.70
Consensus MFE -15.70
Energy contribution -15.98
Covariance contribution 0.28
Combinations/Pair 1.11
Mean z-score -1.54
Structure conservation index 0.64
SVM decision value -0.01
SVM RNA-class probability 0.527720
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6270441 96 - 27905053
UCCU------UGUUGUUC------------GGCUGCUGAUGUUGCUGCUGUGCAUGCAGGCGAUCAAAGCUCAGGGCAAUUAAUCAUUUUGUUUGCCCUUUACACCCAUUUAUU
((((------((((((.(------------(((.((.......)).)))).))).))))).)).........(((((((.(((.....))).)))))))............... ( -26.30)
>DroVir_CAF1 37069 89 - 1
GCC-------UGCCGCU-----------CUU------GCUGUUGUUG-UGUGCAUGCAGGCGAUCAAAGCUCAGAGCAAUUAAUCAUUUUGUUUGCCCUUUACACCCAUUUAUU
(((-------(((.((.-----------(..------((....))..-.).))..))))))....((((....((((((.........))))))...))))............. ( -19.00)
>DroPse_CAF1 32612 108 - 1
UCCU------CGUUGUUCCAGUGCUACUCCUGCUGCUCCUGCUGCUGCUGUGCAUGCAGGCGAUCAAAGCUCAGGGCAAUUAAUCAUUUUGUUUGCCCUUUACACCCAUUUAUU
....------..........(((........(((.(.((((((((......))).))))).).....)))..(((((((.(((.....))).)))))))...)))......... ( -27.80)
>DroGri_CAF1 52226 95 - 1
GCCUU-----UGCCACU-----------GUU--UGCUACUGCUGCUG-UGUGCAUGCAGGCGAUCAAAGCUCAGAGCAAUUAAUCAUUUUGUUUGCCCUUUACACCCAUUUAUU
((((.-----((((((.-----------((.--.((....)).)).)-)).)))...))))....((((....((((((.........))))))...))))............. ( -20.50)
>DroAna_CAF1 42178 100 - 1
UCCU-GCUGAUGUUGCUC------------GGCUAUUGCU-UUGCUGCUGUGCAUGCAGGCGAUCAAAGCUCAGGGCAAUUAAUCAUUUUGUUUGCCCUUUACACCCAUUUAUU
.(((-((((..((.((..------------(((....)))-..)).))....)).)))))............(((((((.(((.....))).)))))))............... ( -26.80)
>DroPer_CAF1 37970 108 - 1
UCCU------CGUUGUUCCAGUGCUACUCCUGCUGCUCCUGCUGCUGCUGUGCAUGCAGGCGAUCAAAGCUCAGGGCAAUUAAUCAUUUUGUUUGCCCUUUACACCCAUUUAUU
....------..........(((........(((.(.((((((((......))).))))).).....)))..(((((((.(((.....))).)))))))...)))......... ( -27.80)
>consensus
UCCU______UGUUGCUC__________C_UGCUGCUGCUGCUGCUGCUGUGCAUGCAGGCGAUCAAAGCUCAGGGCAAUUAAUCAUUUUGUUUGCCCUUUACACCCAUUUAUU
......................................(((((((......))).))))((.......))..(((((((.(((.....))).)))))))............... (-15.70 = -15.98 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:34 2006