| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,265,079 – 6,265,172 |
| Length | 93 |
| Max. P | 0.996086 |
| Location | 6,265,079 – 6,265,172 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 94.91 |
| Mean single sequence MFE | -23.70 |
| Consensus MFE | -23.70 |
| Energy contribution | -23.70 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.31 |
| Structure conservation index | 1.00 |
| SVM decision value | 2.65 |
| SVM RNA-class probability | 0.996086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6265079 93 - 27905053 UUUUAUUUAUAUUUUCGUUUUAUUUCAUUUUUUUUUUUUCUUGUGCGCCGUGAACAUCGCGGGGUGCAAAAGGUUGCGAAAUUGCGACUUGUU ........................................(((..(.(((((.....))))).)..))).((((((((....))))))))... ( -23.70) >DroSec_CAF1 30373 87 - 1 UUUUAUUUAUAUUUUCGUUUUAUUUCAUUU------UUUCUUGUGCGCCGUGAACCUCGCGGGGUGCAAAAGGUUGCGAAAUUGCGACUUGUU ..............................------....(((..(.(((((.....))))).)..))).((((((((....))))))))... ( -23.70) >DroSim_CAF1 31589 89 - 1 UUUUAUUUAUAUUUUCGUUUUAUUUCAUUUU----UUUUCUUGUGCGCCGUGAACCUCGCGGGGUGCAAAAGGUUGCGAAAUUGCGACUUGUU ...............................----.....(((..(.(((((.....))))).)..))).((((((((....))))))))... ( -23.70) >consensus UUUUAUUUAUAUUUUCGUUUUAUUUCAUUUU____UUUUCUUGUGCGCCGUGAACCUCGCGGGGUGCAAAAGGUUGCGAAAUUGCGACUUGUU ........................................(((..(.(((((.....))))).)..))).((((((((....))))))))... (-23.70 = -23.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:31 2006