Locus 2191

Sequence ID 3R_DroMel_CAF1
Location 6,263,566 – 6,263,664
Length 98
Max. P 0.661758
window3562

overview

Window 2

Location 6,263,566 – 6,263,664
Length 98
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 84.04
Mean single sequence MFE -29.57
Consensus MFE -24.49
Energy contribution -25.24
Covariance contribution 0.75
Combinations/Pair 1.12
Mean z-score -1.67
Structure conservation index 0.83
SVM decision value 0.27
SVM RNA-class probability 0.661758
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6263566 98 + 27905053
------------CGAUUCCCUGCCUGCUGUUCUGUCACGUUUCCUGGCCAAGGAC-----UCGCAAACUUGUGCCCGGGACGAAAUGCAUUUGCAAUUGCAUAAAUGAAUAGCAU
------------............((((((((.....((((.((.(((((((...-----.......)))).))).))))))..(((((........)))))....)))))))). ( -30.10)
>DroPse_CAF1 25510 85 + 1
------------------------UCCUGCUCCGUCACGUUUCCUUGGCUGGAGC-----UCGCAA-CUUUGGCCGAGGACGAAAUGCAUUUGCAAUUGCAUAAAUGAACAGUGU
------------------------..(((.((.....((..((((((((..(((.-----......-)))..))))))))))..(((((........)))))....)).)))... ( -27.30)
>DroSec_CAF1 28833 98 + 1
------------CGACUCCCUGCCUGCUGUUCUGUCACGUUUCCUGGCCAAGGAC-----UCGCAAACUUGUGCCCGGGACGAAAUGCAUUUGCAAUUGCAUAAAUGAAUAGCAU
------------............((((((((.....((((.((.(((((((...-----.......)))).))).))))))..(((((........)))))....)))))))). ( -30.10)
>DroSim_CAF1 30073 98 + 1
------------CGAUUCCCUGCCUGCUGUUCUGUCACGUUUCCUGGCCAAGGAC-----UCGCAAACUUGUGCCCGGGACGAAAUGCAUUUGCAAUUGCAUAAAUGAAUAGCAU
------------............((((((((.....((((.((.(((((((...-----.......)))).))).))))))..(((((........)))))....)))))))). ( -30.10)
>DroEre_CAF1 34494 104 + 1
CGAUUC------CGAUUCCCUGCCUGCUGUUCUGUCACGUUUCCUGGCCAAGGAC-----UCGCAAACUUGUGCCCGGGACGAAAUGCAUUUGCAAUUGCAUAAAUGAAUAGCAU
......------............((((((((.....((((.((.(((((((...-----.......)))).))).))))))..(((((........)))))....)))))))). ( -30.10)
>DroYak_CAF1 30325 115 + 1
CGAUUCCGAUUCCGAUUCCCUGCCUGCUGUUCUGUCACGUUUCCUGGCCAAGGACUCGACUCGCAAACUUGUGCCCGGGACGAAAUGCAUUUGCAAUUGCAUAAAUGAAUAGCAU
........................((((((((.....((((.((.(((((((....((...))....)))).))).))))))..(((((........)))))....)))))))). ( -29.70)
>consensus
____________CGAUUCCCUGCCUGCUGUUCUGUCACGUUUCCUGGCCAAGGAC_____UCGCAAACUUGUGCCCGGGACGAAAUGCAUUUGCAAUUGCAUAAAUGAAUAGCAU
........................((((((((.....((((.((.(((((((...............)))).))).))))))..(((((........)))))....)))))))). (-24.49 = -25.24 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:30 2006