| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,263,441 – 6,263,543 |
| Length | 102 |
| Max. P | 0.948945 |
| Location | 6,263,441 – 6,263,543 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 85.60 |
| Mean single sequence MFE | -18.62 |
| Consensus MFE | -16.95 |
| Energy contribution | -16.77 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.948945 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6263441 102 + 27905053 UCCUCUACUUCUCUACUACUCUACUCCUAGCUCCCAGCUCCUUUGCUUCUUUGCUCCUUGUUCCCAUUUUGCAGUGCAUAAAGUUUUAUCGCUGUCGGGAGA .......................((((((((....(((......))).....)))...............((((((.((((....)))))))))).))))). ( -18.90) >DroSec_CAF1 28705 102 + 1 UCCUCUACUCCUCUUCUACUCUACUCCUAGCUCCCAGCUCCUUUGCUUCUUUGCUCCUUGUUCCCAUUUUGCAGUGCAUAAAGUUUUAUCGCUGUCGGGAGA .......................((((((((....(((......))).....)))...............((((((.((((....)))))))))).))))). ( -18.90) >DroEre_CAF1 34364 101 + 1 UCCCCUAUUCCUCUACCCC-GAGUUCCAAGUUCCCAGCUCCUUUGCUCCUUUGCUCCUUGUUCCCAUUUUGCAGUGCAUAAAGUUUUAUCGCUGUCGGGAGA ((((...............-((((...(((.....(((......))).))).))))..............((((((.((((....)))))))))).)))).. ( -17.90) >DroYak_CAF1 30206 86 + 1 UUCUCGACUCCUCUAC--------UCCAAGCUCCCAGCUCCUU--------UGCUCCUUGUUCCCAUUUUGCAGUGCAUAAAGUUUUAUCGCUGUCGGGAGA ................--------......((((((((.....--------.)))...............((((((.((((....)))))))))).))))). ( -18.80) >consensus UCCUCUACUCCUCUACUAC_CUACUCCAAGCUCCCAGCUCCUUUGCUUCUUUGCUCCUUGUUCCCAUUUUGCAGUGCAUAAAGUUUUAUCGCUGUCGGGAGA ..............................((((((((..............)))...............((((((.((((....)))))))))).))))). (-16.95 = -16.77 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:29 2006