Locus 2188

Sequence ID 3R_DroMel_CAF1
Location 6,258,746 – 6,258,838
Length 92
Max. P 0.990576
window3558

overview

Window 8

Location 6,258,746 – 6,258,838
Length 92
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 73.26
Mean single sequence MFE -22.76
Consensus MFE -14.15
Energy contribution -14.15
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.28
Structure conservation index 0.62
SVM decision value 2.22
SVM RNA-class probability 0.990576
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6258746 92 + 27905053
CCCCUUCUUUUUU-----------UUCCAAGCUCAUGCGGCGAAAUUUGUUCAGUUUUCGCUGCAAAGAAAAAUCAAAAUCUCUGCACUGAGGGGAAAAUAAC
...........((-----------((((.......((((((((((..........))))))))))..............((((......)))))))))).... ( -23.20)
>DroVir_CAF1 23277 72 + 1
CCCCUUUAG------------------CUGAGGCAUGCGGCGAAAUUUGUAAAUUUUUCGCUGCAAAACAAAAAGAAAAAUUCUUUGCUG-------------
.........------------------....(((.((((((((((..(....)..))))))))))......(((((.....)))))))).------------- ( -19.40)
>DroSec_CAF1 24004 96 + 1
CCCCUUCUUUUUUUAUU-------UGCCAAACUCAUGCGGCGAAAUGUGUUCAGUUUUCGCUGCACAGCAAAAUCAAAAUAUAUGCACUGAGGGGAAAAUUAC
.((((((..........-------...........((((((((((..........))))))))))..(((.............)))...))))))........ ( -24.52)
>DroSim_CAF1 25048 96 + 1
CCCCUUCUUUUUUUAUU-------UGCCAAGCUCAUGCGGCGAAAUUUGUUCAGUUUUCGCUGCAAAGCAAAAUCAAAAUAUAUGCACUGAGGGGAAAAUUAC
((((((.......((((-------(.....(((..((((((((((..........)))))))))).))).......)))))........))))))........ ( -26.66)
>DroEre_CAF1 29568 91 + 1
CCCCUUCUUUUUU-----------UGGCGAACUCAUGCGGCGAAAUUUGUUCUGUUUUCGCUGCAAAACAAUAUCAAAAUGUCUUUACUGAGCGGCAA-AUGC
...........((-----------((.((..((((((((((((((..........))))))))))..(((.........)))......)))))).)))-)... ( -20.40)
>DroYak_CAF1 25354 103 + 1
CUCCUCCUAUUUUUGCUUUUUUCGUGGCGAACUCAUGCGGCGAAAUUUGUUCAGUUUUCGCUGCAAAACAAAUUCAAAAUCUCUUCACUGAGCGGCAAAAUGC
..........(((((((.(((..((((.(....).((((((((((..........))))))))))...................)))).))).)))))))... ( -22.40)
>consensus
CCCCUUCUUUUUU___________UGCCAAACUCAUGCGGCGAAAUUUGUUCAGUUUUCGCUGCAAAACAAAAUCAAAAUAUCUGCACUGAGGGGAAAAUUAC
...................................((((((((((..........))))))))))...................................... (-14.15 = -14.15 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:26 2006