Locus 2186

Sequence ID 3R_DroMel_CAF1
Location 6,251,326 – 6,251,428
Length 102
Max. P 0.995956
window3556

overview

Window 6

Location 6,251,326 – 6,251,428
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 76.77
Mean single sequence MFE -28.30
Consensus MFE -20.78
Energy contribution -20.18
Covariance contribution -0.60
Combinations/Pair 1.31
Mean z-score -2.49
Structure conservation index 0.73
SVM decision value 2.64
SVM RNA-class probability 0.995956
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6251326 102 - 27905053
CCUACAAUGCCAUAAAGUUGCGGCUAGCUUUUUAUUAUAUGUAACUAGUAAUUUUCUAAGUGUAGCUAUAGUUGCACUUGGAUUGCCAGCGAAGAAUACUUA
.................(((((((..(((..((((.....))))..))).....((((((((((((....))))))))))))..))).)))).......... ( -26.60)
>DroSec_CAF1 16535 102 - 1
CUUAGAAUGCCAUAAAGUUGCGGCUAGCUUUUUAUUAUAUGUAACUAGUAAUUCUCUGAGUGUAGCUAUAGUUGCACUUAGAUUGCCAGCGAAGAAUCCUUA
.................(((((((..(((..((((.....))))..))).....((((((((((((....))))))))))))..))).)))).......... ( -26.90)
>DroSim_CAF1 17671 102 - 1
CUUACAAUGACAUAAAGUUGCGGCUAGCUUUUUAUUGUAUGUAACUAGUAAUUCUCUGAGUGUAGCUAUAGUUGCACUUGGAUUGCCAGCGAAGAAUCCUUA
.................(((((((..(((..((((.....))))..))).....((..((((((((....))))))))..))..))).)))).......... ( -26.00)
>DroEre_CAF1 21897 98 - 1
----CAAUGACAUUAACCUGCGGCUGGUUAAUUGCUUGAUUUGGUUAGUUAUUCGCCCAGUGUAGCAAUAGUUGCACUUGGAUAGCUGGCGAAGAAUCCGCA
----.......(((((((.......)))))))(((..(((((.((((((((((((...((((((((....))))))))))))))))))))...))))).))) ( -32.60)
>DroYak_CAF1 17306 87 - 1
---------------CUCUGCGGCUAGUUAAUUAUCGGAUGUGGGUAGUUAUUCUCUAAGUGUAGCAAUAGUUGCACUUGGAUUGCUGGCGAGGAAUCCUUA
---------------.......((((((((((((((.......))))))))...((((((((((((....))))))))))))..))))))((((...)))). ( -29.40)
>consensus
C_UACAAUGACAUAAAGUUGCGGCUAGCUUUUUAUUAUAUGUAACUAGUAAUUCUCUAAGUGUAGCUAUAGUUGCACUUGGAUUGCCAGCGAAGAAUCCUUA
.................(((((((..(((..((((.....))))..))).....((((((((((((....))))))))))))..))).)))).......... (-20.78 = -20.18 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:24 2006