Locus 2183

Sequence ID 3R_DroMel_CAF1
Location 6,245,340 – 6,245,431
Length 91
Max. P 0.837869
window3552

overview

Window 2

Location 6,245,340 – 6,245,431
Length 91
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 77.43
Mean single sequence MFE -27.60
Consensus MFE -18.41
Energy contribution -17.55
Covariance contribution -0.86
Combinations/Pair 1.22
Mean z-score -1.54
Structure conservation index 0.67
SVM decision value 0.74
SVM RNA-class probability 0.837869
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6245340 91 + 27905053
UACUGGGUCCUUCGGCUGCCUGCGGUGU--UUGCUGGUAAUUUUCAUUGUCACGUGGCGGUAAUUACCGGUGUUGC-AGACACAAACACAGAUG
..((((((.(....)..)))....((((--((((((((((((...((((((....)))))))))))))).....))-)))))).....)))... ( -27.70)
>DroPse_CAF1 6348 85 + 1
UCGUAG------UGGGUGCCUGCGGUGU--UUGCUGGUAAUUUCCAUUGUCACGUGGCGGUAAUUACCGGUGUUGC-AGACACAAACGCAGACA
.....(------((.(((.((((((...--.(((((((((((...((((((....)))))))))))))))))))))-)).)))...)))..... ( -28.80)
>DroWil_CAF1 12017 91 + 1
UACGGGU---UGGGACUGCCUGUGGUGUUUUUGCUGGUAAUUUUCAUUGUCACGUGGUGGUAAUUACCGGUGUUGCCAGACGCACACAUACACG
(((((((---.......)))))))((((....((((((((((.((((..(...)..)))).))))))))))(((((.....))).))..)))). ( -28.60)
>DroMoj_CAF1 15754 69 + 1
----------------------CUGUGU--UGCCUGGUAAUUUUCAUUGUCACGUGGCAGUAAUUACCGGUGUUGC-AGACGCACACACAGACA
----------------------((((((--((((((((((((...((((((....))))))))))))))).(((..-.)))))).))))))... ( -24.10)
>DroAna_CAF1 18255 85 + 1
------CUCGCCAGUCUGCCUGCGGUGU--CGGCUGGUAAUUUUCAUUGUCACGUGGCGGUAAUUACCGGUGUUGC-AGACACAAACACAGACC
------.......(((((......((((--(.((((((((((...((((((....)))))))))))))))).....-.))))).....))))). ( -27.40)
>DroPer_CAF1 6249 85 + 1
UCGUAG------UGGCUGCCUGCGGUGU--UUGCUGGUAAUUUCCAUUGUCACGUGGCGGUAAUUACCGGUGUUGC-AGACACAAACGCAGACA
..((((------...))))(((((((((--((((((((((((...((((((....)))))))))))))).....))-))))))...)))))... ( -29.00)
>consensus
U__U_G______UGGCUGCCUGCGGUGU__UUGCUGGUAAUUUUCAUUGUCACGUGGCGGUAAUUACCGGUGUUGC_AGACACAAACACAGACA
........................((((......((((((((...((((((....))))))))))))))(((((....)))))..))))..... (-18.41 = -17.55 +  -0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:21 2006