Locus 218

Sequence ID 3R_DroMel_CAF1
Location 883,168 – 883,288
Length 120
Max. P 0.546600
window391

overview

Window 1

Location 883,168 – 883,288
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 93.31
Mean single sequence MFE -43.21
Consensus MFE -36.01
Energy contribution -36.57
Covariance contribution 0.56
Combinations/Pair 1.07
Mean z-score -2.01
Structure conservation index 0.83
SVM decision value 0.03
SVM RNA-class probability 0.546600
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 883168 120 - 27905053
AAGAGCCAAGGAGCCGAGGUGGAAAUGCCGGACAAAGAAAGCGGGCAGCAUGUGGGCGGUACGAUACACAUACAUAUCAGCAGUAUCUGGCCUGGUUGAAAACGGCGGCCCACACGGACA
............((((..((((...(((((........((.(((((.(.(((((..((...))...))))).)....(((......)))))))).)).....)))))..)))).))).). ( -34.32)
>DroSec_CAF1 51315 119 - 1
AAGAUCCAAGGAGCCAAAGUAGAAAUGCCGGACAAAGAAAGCGGGCAGCGUGUGGGCGGCACGGC-CACAUACAUAUCAGCGGUAUCUGGCCUGGCUGAAAACGGCGGCCCACACGGGCA
....((....))(((..........((((.(.(.......)).)))).(((((((((..((.(((-((.((((.........)))).)))))))((((....)))).)))))))))))). ( -47.60)
>DroSim_CAF1 50533 119 - 1
AAGAGCCAAGGAGCCAAAGUGGAAAUGCCGGACAAAGAAAGCGGGCAGCGUGUGGGCGGCACGGC-CACAUACAUAUCAGCGGUAUCUGGCCUGGCUGAAAACGGCGGCCCACACGGGCA
....(((......((.....))...((((.(.(.......)).)))).(((((((((..((.(((-((.((((.........)))).)))))))((((....)))).)))))))))))). ( -47.70)
>consensus
AAGAGCCAAGGAGCCAAAGUGGAAAUGCCGGACAAAGAAAGCGGGCAGCGUGUGGGCGGCACGGC_CACAUACAUAUCAGCGGUAUCUGGCCUGGCUGAAAACGGCGGCCCACACGGGCA
............(((..........((((.(.(.......)).)))).(((((((((.((..(.....).......((((((((.....)))..))))).....)).)))))))))))). (-36.01 = -36.57 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:54 2006