Locus 2173

Sequence ID 3R_DroMel_CAF1
Location 6,232,649 – 6,232,753
Length 104
Max. P 0.634767
window3537

overview

Window 7

Location 6,232,649 – 6,232,753
Length 104
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 77.22
Mean single sequence MFE -31.08
Consensus MFE -18.72
Energy contribution -18.25
Covariance contribution -0.47
Combinations/Pair 1.32
Mean z-score -1.49
Structure conservation index 0.60
SVM decision value 0.21
SVM RNA-class probability 0.634767
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6232649 104 - 27905053
UUAACGAUUUGG----AUAUGGAGACUGACUACCAGAACUACGUGGAGUCGCUGUCGGGUGUGUCCUCCGACGAGGACGACUUCUCCACGGUGGACAGCUCGGACGAG
............----.....(((.(((.(((((.(.....)((((((.((((....))))(((((((....)))))))....))))))))))).))))))....... ( -33.80)
>DroVir_CAF1 5835 95 - 1
---------AGG----CAAUGGAGACUGAUUACCAAAAUUACGUCGAGUCAUUGUCGGGGGUUUCUUCGGAUGACGAUGAUAUCUCCACGGUGGAUAGUUCUGAUGAG
---------.((----((((((.((((((((.....))))).)))...))))))))((((((.((.(((.....))).)).)))))).((..(((....)))..)).. ( -28.90)
>DroGri_CAF1 3001 90 - 1
------------------AUGGAGACUGAUUACCAAAAUUACGUCGAGUCAUUGUCGGGAGUAUCCUCGGAUGACGAUGACAUCUCCACAGUGGAUAGCUCCGAUGAG
------------------.((((((((((((.....))))).)))((((((((((((.(((....)))...)))))))))).))))))((.((((....)))).)).. ( -28.00)
>DroEre_CAF1 5815 90 - 1
------------------AUGGAGACUGACUACCAGAACUACGUGGAGUCGCUGUCGGGAGUGUCCUCCGACGAGGACGACUUCUCCACGGUGGACAGCUCGGACGAG
------------------...(((.(((.(((((.(.....)(((((((((....)))((((((((((....)))))).))))))))))))))).))))))....... ( -33.70)
>DroMoj_CAF1 3029 94 - 1
----------GG----CAAUGGAGACUGAUUACCAAAAUUACGUGGAGUCAUUGUCGGGAGUAUCCUCAGAUGACGAUGACAUAUCCACGGUGGAUAGUUCUGAUGAG
----------..----((.(((((.(((.(((((........(((((((((((((((.(((....)))...))))))))))...)))))))))).)))))))).)).. ( -30.40)
>DroPer_CAF1 6237 108 - 1
UUAGAGUUUGGGGAGGCAAUGGAGACUGAUUAUCAAAAUUAUGUCGAGUCAUUGUCCGGUGUAUCUUCAGAUGACGAUGAUAUGUCCACAGUGGACAGUUCGGACGAG
.....(((((((((.(((.((((.(.(((((..((......))...))))).).)))).))).)))))))))..((.(((..(((((.....)))))..)))..)).. ( -31.70)
>consensus
__________GG____CAAUGGAGACUGAUUACCAAAAUUACGUCGAGUCAUUGUCGGGAGUAUCCUCAGAUGACGAUGACAUCUCCACGGUGGACAGCUCGGACGAG
.....................(((.(((...................((((((((((.(((....)))...))))))))))...(((.....)))))))))....... (-18.72 = -18.25 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:06 2006