| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,229,350 – 6,229,467 |
| Length | 117 |
| Max. P | 0.547939 |
| Location | 6,229,350 – 6,229,467 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 80.03 |
| Mean single sequence MFE | -29.63 |
| Consensus MFE | -19.28 |
| Energy contribution | -18.95 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.547939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6229350 117 - 27905053 UGCUCAACUCGGAUAUCCGAAAGUCCAAGAUGUUCAUCAGUGAUCUCGACAACAUGGUAGAGUUCCACUUAAAGCGCACACACCACGAGACACUGUGAGCGUAUUUUUCAGUUUGAC ...((((.((((....)))).........(((((((.(((((.(((((......((((...(((........)))......)))))))))))))))))))))..........)))). ( -28.60) >DroPse_CAF1 3272 105 - 1 UGCUCAACUCGGAUAUUAAGAAGUCAAAAUCGUAUAUCUGCGAUCUCGACAACAUGGUGGAGUUUCACCUGAAACGCACACCCCAAGGGACGCUCUGAGCAGCUC------------ ((((((....((((((...((........))..))))))(((.((((........((((..(((((....)))))...))))....)))))))..))))))....------------ ( -30.50) >DroSec_CAF1 2438 117 - 1 UGCUCAAUUCGGAUAUCCGAAAGUCCAAGAUGUUCAUCAGUGAUCUCGACAACAUGGUGGAGUUCCACUUAAAGCGUACACACCACGAGACGCAGUGAGCGUAUUUUUCAGUUUACC .(((((.(((((....))))).......(((....))).(((.(((((.......(((((....)))))......(....)....))))))))..)))))................. ( -29.10) >DroSim_CAF1 4675 117 - 1 UGCUCAACUCGGAUAUCCGAAAGUCCAAGAUGUUCAUCAGUGAUCUCGACAACAUGGUGGAGUUCCACUUAAAGCGCACACACCACGAGACGCUGUGAGCGUAUUUUUCAGUUUACC .(((((....((((((((....).....)))))))..(((((.(((((......(((((..(((........))).....))))))))))))))))))))................. ( -31.40) >DroYak_CAF1 2566 117 - 1 UGCUCAACUCGGACAUCCGAAAGUCCAAGAUGUUCAUCAGUGAUCUCGACAACAUGGUGGAAUUUCACUUGAAACGCACACACCACGAGAUGCUAUGAACUUAUUUUUCAGUUUACC .......((.((((........)))).))..((((((.(((.((((((......(((((...((((....))))......))))))))))))))))))))................. ( -27.70) >DroPer_CAF1 3194 105 - 1 UGCUCAACUCGGAUAUUAAGAAGUCAAAAUCGUAUAUCUGCGAUCUCGACAACAUGGUGGAGUUUCACCUGAAACGCACACCCCAAGGGACGCUCUGAGCAGCUC------------ ((((((....((((((...((........))..))))))(((.((((........((((..(((((....)))))...))))....)))))))..))))))....------------ ( -30.50) >consensus UGCUCAACUCGGAUAUCCGAAAGUCCAAGAUGUUCAUCAGUGAUCUCGACAACAUGGUGGAGUUCCACUUAAAACGCACACACCACGAGACGCUGUGAGCGUAUUUUUCAGUUUACC .(((((....((((........)))).............(((.(((((.......(((((....)))))......(....)....))))))))..)))))................. (-19.28 = -18.95 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:03 2006