Locus 217

Sequence ID 3R_DroMel_CAF1
Location 882,291 – 882,404
Length 113
Max. P 0.869916
window390

overview

Window 0

Location 882,291 – 882,404
Length 113
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 92.78
Mean single sequence MFE -40.87
Consensus MFE -38.43
Energy contribution -39.77
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -1.99
Structure conservation index 0.94
SVM decision value 0.87
SVM RNA-class probability 0.869916
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 882291 113 - 27905053
GUGUAUCUGGCAGAUACUUACGGGUAAUGCGGAUGUA-------CACGUCUGCAUGCCGUACGAACGGGUAUCUGCAAGAUAGUUUAAUCACCCGCCGCCGCUGGCUCGCCAUGAAAACC
...(((((.((((((((((((((...(((((((((..-------..))))))))).)))))......))))))))).)))))((((..(((...((.(((...)))..))..))))))). ( -41.30)
>DroSec_CAF1 50344 120 - 1
GUGUAUCUGGCAGUUACUUACGGGUAAUGCGGAUGUAUUUAUCACACGACUGCAUGCCGUACGAACGGGUAUCUGCAAGAUACUUUAAUCGCCCGCCGCCGCUGGCUCGCCAUGACAAAC
.(((...((((.(((.(.(((((...((((((.(((.........))).)))))).))))).))))(((((((.....))))))).....(((.((....)).)))..))))..)))... ( -36.00)
>DroSim_CAF1 49546 120 - 1
GUGUAUCUGGCAGAUACUUACGGGUAAUGCGGAUGUAUUUAUCACACGUCUGCAUGCCGUACGAACGGGUAUCUGCAAGAUACUUUAAUCGCCCGCCGCCGCUGGCUCGCCAUGAAAAAC
..((((((.((((((((((((((...((((((((((.........)))))))))).)))))......))))))))).)))))).......(((.((....)).))).............. ( -45.30)
>consensus
GUGUAUCUGGCAGAUACUUACGGGUAAUGCGGAUGUAUUUAUCACACGUCUGCAUGCCGUACGAACGGGUAUCUGCAAGAUACUUUAAUCGCCCGCCGCCGCUGGCUCGCCAUGAAAAAC
..((((((.((((((((((((((...((((((((((.........)))))))))).)))))......))))))))).)))))).......(((.((....)).))).............. (-38.43 = -39.77 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:53 2006