| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,222,481 – 6,222,584 |
| Length | 103 |
| Max. P | 0.740094 |
| Location | 6,222,481 – 6,222,584 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.40 |
| Mean single sequence MFE | -21.02 |
| Consensus MFE | -15.85 |
| Energy contribution | -15.63 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.740094 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6222481 103 - 27905053 AUGA----UAGCG------------AGU-UUUGGGUCGCUCUAAAACUGUAAUAUUUACCCUCGAUGUCUUAUUACGUCUUCCGGUGGCAUAUUCAGCAUCGUCCUCGCUGUAUGCCGUG ...(----(((((------------(((-((((((....)))))))(((.((((((((((...(((((......)))))....))))).)))))))).......))))))))........ ( -25.80) >DroVir_CAF1 39611 89 - 1 -------------------------------UUUUUCGCUCUAAAAUUGUAAUAUUUACCCUCGAUGUUUUAUUACGUCUUCCGGUGGCAUAUUCAGCAUCAUCCUCGCUGUAUGCUGUU -------------------------------..........................(((...(((((......)))))....)))((((((..((((.........))))))))))... ( -15.80) >DroGri_CAF1 42818 94 - 1 -------------------------UUU-UUUUGUUCGCUCUAAAAUUGUAAUAUUUACCCUCGAUGUUUUAUUACGUCUUCCGGUGGCAUAUUCAGCAUCAUCCUCGCUGUAUGCUGUU -------------------------...-............................(((...(((((......)))))....)))((((((..((((.........))))))))))... ( -15.80) >DroWil_CAF1 55395 113 - 1 UUCA----UUUUGCAUUUUGCAUUUUGU-UUUUGC--UCUCUAAAAUUGUAAUAUUUACCCUCGAUGUUUUAUUACGUCUUCCUGUGGCAUAUUCAGCAUCGUCCUCGCUGUAUGCCGUU ....----..(((((.(((.......((-....))--......))).)))))...........(((((......))))).......((((((..((((.........))))))))))... ( -19.52) >DroAna_CAF1 44583 107 - 1 AUGUGAUUUCGCG------------GCU-UGUGAGUCGCUCUAAAAUUUUAAUAUUUACCCUCGAUGUUUUAUUACGUCUUCCGGUGGCAUAUUCAGCAUCGUCCUCGCUGUAUGCCGUG ..........(((------------(((-....))))))..................(((...(((((......)))))....)))((((((..((((.........))))))))))... ( -26.60) >DroPer_CAF1 45892 109 - 1 GUGA----UCGCUCAUGAUC-----AGUUUCUGGAU--CUCUAAAAUUGUAAUAUUUACCCUCGAUGUUUUAUUACGUCUUCCUGUGGCAUAUUCAGCAUCGUCCUCGCUGUAUGCCGUC .(((----(((....)))))-----)......(((.--..........(((.....)))....(((((......))))).)))...((((((..((((.........))))))))))... ( -22.60) >consensus _UGA____U_GCG____________AGU_UUUGGGUCGCUCUAAAAUUGUAAUAUUUACCCUCGAUGUUUUAUUACGUCUUCCGGUGGCAUAUUCAGCAUCGUCCUCGCUGUAUGCCGUU ...............................................................(((((......))))).......((((((..((((.........))))))))))... (-15.85 = -15.63 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:56 2006