| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,194,713 – 6,194,818 |
| Length | 105 |
| Max. P | 0.626708 |
| Location | 6,194,713 – 6,194,818 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 84.91 |
| Mean single sequence MFE | -26.50 |
| Consensus MFE | -16.92 |
| Energy contribution | -17.55 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.626708 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6194713 105 + 27905053 CAAACUGUAAAUAUUAACAGGUGCCCCUUGGGGCAUUUGGGGAUGAGAAGUGAUGAGUGGCGUGAAUAUGGAAGCAUGGAUAUGGAAGCAUGGAGGCGUUGGCAG ....((((...((((..(((((((((....)))))))))..)))).............(((((...((((....))))..((((....))))...))))).)))) ( -30.60) >DroSec_CAF1 15288 98 + 1 CAAACUGUAAAUAUUAACAGGUGCCCCUUGGGGCAUUUGGGGAUGAGAAGUGAUGAGUGGCGUGAAUAUGGAAACCUGGAUAUGGAAGCGAGGAGGCG------- ((.(((.....((((..(((((((((....)))))))))..))))...)))..)).....((((..((.(....).))..))))...((......)).------- ( -24.70) >DroSim_CAF1 15701 98 + 1 CAAACUGUAAAUAUUAACAGGUGCCCCUUGGGGCAUUUGGGGAUGAGAAGUGAUGAGUGGCGUGAAUAUGGAAACCUGGAUAUGGAAGCAAGGAGGCG------- ((.(((.....((((..(((((((((....)))))))))..))))...)))..)).....((((..((.(....).))..))))...((......)).------- ( -24.50) >DroYak_CAF1 11110 99 + 1 CAAACUGUAAAUAUUAACAGGUGCCCCUUGGGGCAACUUGGUAUGAGAAAUGAUGAGUGGAGUGAAUGUGGAAGGCUGG------CAACAUGGAGGAGCUGGCAG ....((....(((((..(((((((((....)))).))))).(((.(....).))).........)))))...))((..(------(..(.....)..))..)).. ( -26.20) >consensus CAAACUGUAAAUAUUAACAGGUGCCCCUUGGGGCAUUUGGGGAUGAGAAGUGAUGAGUGGCGUGAAUAUGGAAACCUGGAUAUGGAAGCAAGGAGGCG_______ ....(..((..((((..(((((((((....)))))))))..)))).....(.(((.....))).).))..).................................. (-16.92 = -17.55 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:46 2006