Locus 216

Sequence ID 3R_DroMel_CAF1
Location 881,908 – 882,028
Length 120
Max. P 0.573331
window389

overview

Window 9

Location 881,908 – 882,028
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 99.44
Mean single sequence MFE -38.43
Consensus MFE -38.43
Energy contribution -38.43
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.39
Structure conservation index 1.00
SVM decision value 0.08
SVM RNA-class probability 0.573331
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 881908 120 + 27905053
AGGUAGCGAAAAAGAGAGUGUCGCGCGUAUCUGUCGGAUGCAGAUAUAUGGACGCGUAUAGAUACGCAGAUGCGAUAGCGGCUUUGUUUCGAGCUUAGGCUGCAUUAUCAAUCACCUGUG
((((.((((...........))))((((((((((((..(.((......)).)..)).)))))))))).(((..(((((((((((.((.....))..)))))))..)))).)))))))... ( -38.70)
>DroSec_CAF1 49946 120 + 1
AGGUAGCGAAAAAGAGAGUGUCGCGCGUAUCUGUCGGAUGCAGAUAUAUGGACGCGUAUAGAUACGCAGAUGCGAUAGCGGCUUUGUCUCGAGCUUAGGCUGCAUUAUCAAUCACCUGUG
((((.((((...........))))((((((((((((..(.((......)).)..)).)))))))))).(((..(((((((((((.((.....))..)))))))..)))).)))))))... ( -38.30)
>DroSim_CAF1 49149 120 + 1
AGGUAGCGAAAAAGAGAGUGUCGCGCGUAUCUGUCGGAUGCAGAUAUAUGGACGCGUAUAGAUACGCAGAUGCGAUAGCGGCUUUGUCUCGAGCUUAGGCUGCAUUAUCAAUCACCUGUG
((((.((((...........))))((((((((((((..(.((......)).)..)).)))))))))).(((..(((((((((((.((.....))..)))))))..)))).)))))))... ( -38.30)
>consensus
AGGUAGCGAAAAAGAGAGUGUCGCGCGUAUCUGUCGGAUGCAGAUAUAUGGACGCGUAUAGAUACGCAGAUGCGAUAGCGGCUUUGUCUCGAGCUUAGGCUGCAUUAUCAAUCACCUGUG
((((.((((...........))))((((((((((((..(.((......)).)..)).)))))))))).(((..(((((((((((.((.....))..)))))))..)))).)))))))... (-38.43 = -38.43 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:52 2006