Locus 2159

Sequence ID 3R_DroMel_CAF1
Location 6,191,618 – 6,191,716
Length 98
Max. P 0.865821
window3515

overview

Window 5

Location 6,191,618 – 6,191,716
Length 98
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 78.13
Mean single sequence MFE -38.88
Consensus MFE -23.50
Energy contribution -24.64
Covariance contribution 1.14
Combinations/Pair 1.08
Mean z-score -1.91
Structure conservation index 0.60
SVM decision value 0.85
SVM RNA-class probability 0.865821
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6191618 98 - 27905053
CUUUGCCCUUGCCAAUUUCAGGACGUAUCCGUUCUGCCCAGUGGGGGACUACCAGGGCAACGGCCAGACGGCGUACUACUCGACC---------ACGGGUCAGUACG
....(((((.(((......((((((....))))))((((.((((....))))..))))...))).))..)))((((((((((...---------.))))).))))). ( -41.80)
>DroPse_CAF1 16999 96 - 1
CCAUCC-CGUUCCA----CAGGACAUAUCCGUUCUGCCCGGUGGCCGACUACCAGGGCAAUGGUCAGAC---AUACUACUCGACCGC---GUCGACGGGCCAGUAUG
....((-(((.(.(----((((((......)))))(((((((((....))))).))))...((((((..---......)).))))..---)).))))))........ ( -32.00)
>DroSec_CAF1 12295 98 - 1
CUUUGCCCUUGCCAAUUUCAGGACGUAUUCGUUCUGCCCGGUGGGGGACUACCAGGGCAACGGCCAGACGGCGUACUACUCGACC---------ACGGGUCAGUACG
....(((((.(((......((((((....))))))(((((((((....))))).))))...))).))..)))((((((((((...---------.))))).))))). ( -46.30)
>DroSim_CAF1 12299 98 - 1
CUUUGCCCUUGCCAAUUUCAGGACGUAUCCGUUCUGCCCGGUGGGGGACUACCAGGGCAACGGCCAGACGGCGUACUACUCGACC---------GCGGGUCAGUACG
....(((((.(((......((((((....))))))(((((((((....))))).))))...))).))..)))((((((((((...---------.))))).))))). ( -46.00)
>DroMoj_CAF1 7583 101 - 1
CGUUUCGCCUGCCCA---CAGGACAUAUCCGUUCUGCCCGGUGGGCGACUACCAGAGCAAUGGCCAGAC---GUAUUACUCCACCACGGCGGCGACGGGCAAUUACA
.........(((((.---..(((....)))((((((((.((((((((.((.(((......)))..)).)---))......)))))..))))).))))))))...... ( -34.00)
>DroAna_CAF1 19728 91 - 1
GUAUCCCC-------UCCCAGGACCUAUCCGUUCUGCCCGGUGGGCGAUUACCAGGGCACCGGCCAGACGGCCUACUACUCGACC---------ACGGGGCAGUAUG
...(((..-------.....)))......(((.((((((.((((.(((......((...))((((....))))......))).))---------)).)))))).))) ( -33.20)
>consensus
CUUUGCCCUUGCCAAUUUCAGGACGUAUCCGUUCUGCCCGGUGGGCGACUACCAGGGCAACGGCCAGACGGCGUACUACUCGACC_________ACGGGUCAGUACG
..........(((......(((((......)))))(((((((((....))))).))))...)))........(((((.((((.............))))..))))). (-23.50 = -24.64 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:45 2006