Locus 2158

Sequence ID 3R_DroMel_CAF1
Location 6,190,163 – 6,190,261
Length 98
Max. P 0.933493
window3514

overview

Window 4

Location 6,190,163 – 6,190,261
Length 98
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 78.22
Mean single sequence MFE -28.22
Consensus MFE -18.51
Energy contribution -19.27
Covariance contribution 0.75
Combinations/Pair 1.23
Mean z-score -2.02
Structure conservation index 0.66
SVM decision value 1.23
SVM RNA-class probability 0.933493
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6190163 98 - 27905053
GAGCAAGACGAAACUGUAUCUGUUGUGCCACUGCGCAGAAGUGCAGAAGUUCGUGCGAGAGGUGGGUGGAGCGGCCACCAAUGGUAGCCAAUAGAUAG
................(((((((((.((..((((((....)))))).......(((.(..(((((.((...)).)))))..).)))))))))))))). ( -32.90)
>DroPse_CAF1 15633 85 - 1
GAGCAAGACAAAGCUGUAUCUGUUGUGCCACUGCGCAGAAGUGCAAAAGUUCGUACGCGAGGUGGGUGCAAUGGACG-----G----AGAAAAG----
.(((........)))...(((((((..((..(((((....)))))..(.((((....)))).).))..)))))))..-----.----.......---- ( -24.80)
>DroGri_CAF1 6109 86 - 1
GAGCAAGACGAAACUGUAUCUGUUGUGCCACUGCGCAGAAGUGCAAAAGUUUGUGCGCGAGGUAAGUUCGAUAGAUUCCCC--------AAAAG----
.................((((((((((((..((((((.(((........))).)))))).))))....)))))))).....--------.....---- ( -19.60)
>DroEre_CAF1 11163 93 - 1
GAGCAAGACGAAGCUGUAUCUGUUGUGCCACUGCGCAGAAGUGCAGAAGUUCGUGCGAGAGGUGGGUGCAGCGG-----AUUGGUGGCCAAUAGAUGG
.(((........))).(((((((((.((((((((((....))))...((((((((((.........)))).)))-----)))))))))))))))))). ( -34.70)
>DroMoj_CAF1 6228 86 - 1
GAGCAAGACGAAGCUGUAUCUGUUGUGCCACUGCGCAGAAGUGCAAAAGUUUGUGCGCGAGGUGAGUACAGUGGAUGCCGA--------GAAUA----
.(((........)))(((((..(((((((((((((((.(((........))).)))))..)))).))))))..)))))...--------.....---- ( -31.90)
>DroPer_CAF1 15613 85 - 1
GAGCAAGACAAAGCUGUAUCUGUUGUGCCACUGCGCAGAAGUGCAAAAGUUCGUACGCGAGGUGGGUGCAAUGGACG-----G----ACAAAAG----
.(((........)))((.(((((((..((..(((((....)))))..(.((((....)))).).))..)))))))..-----.----)).....---- ( -25.40)
>consensus
GAGCAAGACGAAGCUGUAUCUGUUGUGCCACUGCGCAGAAGUGCAAAAGUUCGUGCGCGAGGUGGGUGCAAUGGACG_____G_____CAAAAG____
.(((........)))...((((((((((((((((((((((.(.....).))).)))))..)))).))))))))))....................... (-18.51 = -19.27 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:44 2006