Locus 2157

Sequence ID 3R_DroMel_CAF1
Location 6,178,108 – 6,178,198
Length 90
Max. P 0.810279
window3513

overview

Window 3

Location 6,178,108 – 6,178,198
Length 90
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 82.23
Mean single sequence MFE -33.27
Consensus MFE -26.75
Energy contribution -27.12
Covariance contribution 0.38
Combinations/Pair 1.17
Mean z-score -1.78
Structure conservation index 0.80
SVM decision value 0.65
SVM RNA-class probability 0.810279
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6178108 90 - 27905053
AUGUGUAUGGGUGUGUGUGCGCUGGGGCCGUGAGAAAAUCUAUGCGGCAUACAGCUGGGCGCUCAUAUUC-GGCAGCAGAGCGAAAUGCA----------------G
.(((...((((((((.((((((((..((((((((.....)).))))))...))))...)))).)))))))-)...)))..((.....)).----------------. ( -33.40)
>DroSec_CAF1 30329 90 - 1
AUGUGUAUGGGUGUGUGUGCGCUGGGGCCGUGAGAAAAUCUAUGCGGCAUACAGCUGGGCGCUCAUAUUC-GGCAGCAGAGCGAAAUGCA----------------G
.(((...((((((((.((((((((..((((((((.....)).))))))...))))...)))).)))))))-)...)))..((.....)).----------------. ( -33.40)
>DroSim_CAF1 33893 90 - 1
AUGUGUAUGGGUGUGUGUGCGCUGGGGCCGUGAGAAAAUCUAUGCGGCAUACAGCUGGGCGCUCAUAUUC-GGCAGCAGAGCGAAAUGCA----------------G
.(((...((((((((.((((((((..((((((((.....)).))))))...))))...)))).)))))))-)...)))..((.....)).----------------. ( -33.40)
>DroMoj_CAF1 29935 102 - 1
--GUGUGU--GUGUGUGCGUGUGCGAGCCGUGAGAAAAUCUAUGCGGCAUACAGCUGGGCGCUCAUAUUCAAGCAACAAA-CGAACCACAGCGCGCACUGAGCAGCG
--((.(((--..((((((((((((..((...((.....))...)).)))))).((((((.(((........)))..(...-.)..)).))))))))))...))))). ( -32.90)
>consensus
AUGUGUAUGGGUGUGUGUGCGCUGGGGCCGUGAGAAAAUCUAUGCGGCAUACAGCUGGGCGCUCAUAUUC_GGCAGCAGAGCGAAAUGCA________________G
...((((((((((((.((((((((..((((((((.....)).))))))...))))...)))).)))))))..((......))...)))))................. (-26.75 = -27.12 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:43 2006