Locus 2155

Sequence ID 3R_DroMel_CAF1
Location 6,176,512 – 6,176,603
Length 91
Max. P 0.733789
window3508

overview

Window 8

Location 6,176,512 – 6,176,603
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 98.35
Mean single sequence MFE -30.16
Consensus MFE -27.76
Energy contribution -27.96
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.38
Structure conservation index 0.92
SVM decision value 0.43
SVM RNA-class probability 0.733789
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6176512 91 - 27905053
AACAACACAGCUUUGGAGCGAGCGAGGCGGGGAAUAUUUGGCCGCAGGGGCGAGCGAGAUGGCGAGUGGAACCAAAGUUUCGCCGCCAAAC
.........((((((.......)))))).......((((.(((((....))).)).))))((((.(((((((....))))))))))).... ( -30.60)
>DroSec_CAF1 28731 91 - 1
AACAACAAAGCUUUGGAGCGAGCGAGGCGGGGAAUAUUUGGCCGCAGGGGCGAGCGAGAUGGCGAGUGGAACCAAAGUUUCGCCGCCAAAC
.........((((((.......)))))).......((((.(((((....))).)).))))((((.(((((((....))))))))))).... ( -30.60)
>DroSim_CAF1 32317 91 - 1
AACAACAAAGCUUUGGAGCGAGCGAGGCGGGGAAUAUUUGGCCGCAGGGGCGAGCGAGAUGGCGAGUGGAACCAAAGUUUCGCCGCCAAAC
.........((((((.......)))))).......((((.(((((....))).)).))))((((.(((((((....))))))))))).... ( -30.60)
>DroEre_CAF1 27903 91 - 1
AACAACAAAGCUUUGGAGCGAGCGAGGCGGGGAAUAAUUGGCCGCAGGGGCGAGCGAGAUGGCGAGUGGAACCAAAGUUUCGCCGCCAAAC
.........((((((.......)))))).........((.(((((....))).)).)).(((((.(((((((....))))))))))))... ( -29.40)
>DroYak_CAF1 28847 91 - 1
AACAACAAAGCUUUGGAGCGAGCGAGGCGGGGAAUACUUGGACGCAGGGGCGAGCGAGAUGGCGAGUGGAACCAAAGUUUCGCCGCCAAAC
.........((((((.......))))))........((((..(((....)))..)))).(((((.(((((((....))))))))))))... ( -29.60)
>consensus
AACAACAAAGCUUUGGAGCGAGCGAGGCGGGGAAUAUUUGGCCGCAGGGGCGAGCGAGAUGGCGAGUGGAACCAAAGUUUCGCCGCCAAAC
.........((((((.......)))))).........((.(((((....))).)).)).(((((.(((((((....))))))))))))... (-27.76 = -27.96 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:38 2006