| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,162,109 – 6,162,208 |
| Length | 99 |
| Max. P | 0.530976 |
| Location | 6,162,109 – 6,162,208 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 86.87 |
| Mean single sequence MFE | -27.48 |
| Consensus MFE | -17.30 |
| Energy contribution | -18.30 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.530976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6162109 99 - 27905053 AAUUCGGCGAGCAGAGCUUCUUCAUCCGCAGUUGAAAUUAUGGAUUUUUUGAUUGUGGAAGGGCUUUUGAUUUCAGAUGGUUUAUCUUCAUCAGACAUC ............((((((.((...((((((((..(((.........)))..)))))))))))))))).(((.((.(((((.......))))).)).))) ( -23.50) >DroSec_CAF1 23932 99 - 1 AAUUCGGCGAGCAAAGCUUCUUCAUCCGCAGUGGAAAUUGUGGAUUUUUUUAUUGUUGGAGGGCUUUCGCUUUCAGAUGGUUUAUCUUCAUCAGACUUC ......(.((((((((((.(((((((((((((....))))))))............))))))))))).)))).).(((((.......)))))....... ( -28.90) >DroEre_CAF1 24060 99 - 1 AAUUCGGCGAGCAGAGCUUCUUCAUCCGCAGUGGAAAUUGUGGAUUUUUUGAUUGUGGGAGGGCUUUCGCCUUCUGCUGGUUUAUCUUUAUUAGAUUCC .....(((.((((((((((((.((((((((((....)))))))).........)).)))))(((....)))))))))).))).((((.....))))... ( -31.10) >DroYak_CAF1 24223 99 - 1 AAUUCCGCAAGCAGAGCUUCUUCAUCCGCAAUGGAAAUUGUGGAUUUUUUGAUUGUGGGAGCGCUUUCACCAUCAACUGGUUCAUCAUUAUCAGACUUC ..((((((((.(((((.......(((((((((....))))))))).))))).))))))))................(((((........)))))..... ( -26.40) >consensus AAUUCGGCGAGCAGAGCUUCUUCAUCCGCAGUGGAAAUUGUGGAUUUUUUGAUUGUGGGAGGGCUUUCGCCUUCAGAUGGUUUAUCUUCAUCAGACUUC .....(((((...(((((.(((((((((((((....)))))))))............)))))))))))))).....(((((........)))))..... (-17.30 = -18.30 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:36 2006