Locus 2152

Sequence ID 3R_DroMel_CAF1
Location 6,161,278 – 6,161,383
Length 105
Max. P 0.581988
window3505

overview

Window 5

Location 6,161,278 – 6,161,383
Length 105
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 82.18
Mean single sequence MFE -26.60
Consensus MFE -17.73
Energy contribution -18.40
Covariance contribution 0.67
Combinations/Pair 1.38
Mean z-score -1.66
Structure conservation index 0.67
SVM decision value 0.10
SVM RNA-class probability 0.581988
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6161278 105 - 27905053
UCGUUGUCCGAUACAAUAAACGAA------UCGUCGCCAUCAGAUUCUUCUGGGGUAGACUCCUCAGUAUCUUUACUGCCAACGGACUCCCCAUCGAUUGGAAUUUCAUUC
.....(((((..............------..((((((.(((((....)))))))).)))....(((((....)))))....)))))...(((.....))).......... ( -25.90)
>DroSec_CAF1 23140 105 - 1
UCGUUGUCCGAUACAAUAAACGAA------UCGUCGCCAUCAGAUUCUUCUGGGGUAGACUCCUCAGUAUCCUCACUGCCAACGGACUCCCCAUCGAUUGGAAUUUCAUUC
.....(((((..............------..((((((.(((((....)))))))).)))....((((......))))....)))))...(((.....))).......... ( -24.00)
>DroSim_CAF1 24492 105 - 1
UCGUUGUCCGAUACAAUAAACGAA------UCGUCGCCAUCAGAUUCUUCUGGGGUAGACUCCUCAGUAUCCUCACUGCCAACGGACUCCCCAUCGAUUGGAAUUUCAUUC
.....(((((..............------..((((((.(((((....)))))))).)))....((((......))))....)))))...(((.....))).......... ( -24.00)
>DroEre_CAF1 23319 105 - 1
UCAUUGUCAGAGACAAUGAAGGAA------UCGUCGCCCUCAGAUUCUUCUGGGGCAGACUCUUCAGUAUCUUUACUGCCCACGGACUCCCCAUCGAUUGGGAUUUCAUUC
((((((((...)))))))).((..------..(((((((.((((....)))))))).)))....(((((....))))).))..(((.((((........)))).))).... ( -37.10)
>DroYak_CAF1 23437 105 - 1
GCAUCGUCAGAGACGAUAAAGGAA------UCGUCGCCUUCGGAUUCUUCUGGGGCAGACUCCUCAGUAUCUUUACUGCCAACGGACUCCCCAUCGAUUGGAAUUUCAUUC
.....(((...((((((......)------)))))((((.((((....)))))))).)))....(((((....)))))(((((((........))).)))).......... ( -28.60)
>DroMoj_CAF1 23858 108 - 1
UCAUCAUCUGAUACUAUAAACGAGAGUUUUUCAUCGGCACU---AUCUUCUGACUGAUCAUCAGUAGUGUCCUUGCUGCCAACAGAUUCGCCAUCUACUGGGAUUUCAUUU
.......(((((.....((((....))))...)))))....---......(((..((((.(((((((((.(....(((....)))....).)).))))))))))))))... ( -20.00)
>consensus
UCAUUGUCCGAUACAAUAAACGAA______UCGUCGCCAUCAGAUUCUUCUGGGGUAGACUCCUCAGUAUCCUUACUGCCAACGGACUCCCCAUCGAUUGGAAUUUCAUUC
.....(((((......................((((((.(((((....)))))))).)))....(((((....)))))....)))))...(((.....))).......... (-17.73 = -18.40 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:35 2006