| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,160,334 – 6,160,453 |
| Length | 119 |
| Max. P | 0.516152 |
| Location | 6,160,334 – 6,160,453 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.76 |
| Mean single sequence MFE | -31.68 |
| Consensus MFE | -20.88 |
| Energy contribution | -22.04 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.66 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516152 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6160334 119 - 27905053 AUUAAGUCAACAGUAGAAACGUUUUGUGGAGUAUCUCUUUUCUUUUCUAUUUGAGGAUGAUCAAUCAGUUGCUGAGUUUCUACUUUGCUUUCAAUUAUAGGGGGUUCAAU-CUUCUGGGG ...(((.(((.(((((((((........((.((((.(((.............))))))).))..((((...))))))))))))))))))).......((((((((...))-))))))... ( -23.72) >DroSec_CAF1 22172 119 - 1 AUUAAGUCAAUAGUAGAAACGUUUUGUGCAGUAGCUCUUUUCUUUUCCAUUUGAGGAGAAUCAAUUAGCUUAUGAGUUUCUACUUUGCUUUCAAUUUUAGGAGGUUCAAC-CUUCUGGGG ...(((.(((.(((((((((((.....))...((((..((..((((((......))))))..))..)))).....))))))))))))))).....(((((((((.....)-)))))))). ( -31.70) >DroSim_CAF1 23524 119 - 1 AUUAAGUCAAUAGUAGAAACGUUUUGUGCAGUAGCUCUUUUCUUUUCCAUUUGAGGAGAAUCAAUUAGCUUAUGAGUUUCUACUUUGCUUUCAAU-UUAGGUGGUUCAACCCUUCUGGGG ...(((.(((.(((((((((((.....))...((((..((..((((((......))))))..))..)))).....))))))))))))))).....-.............(((....))). ( -27.40) >DroEre_CAF1 22366 119 - 1 AUCAAUUCCACAGUAGAAAACCUUUGUGGAGUAGCGGAUUUCUUUUCCACUUGAGGGAGAUCAGUCGGCUGCUGAGUUUCUACUUUGCUUUCCAGUUUAGGAGAAUCAAU-CUUCUGGGG ........((.((((((((.((.....))((((((.((((..((((((......))))))..)))).))))))...)))))))).))........(((((((((.....)-)))))))). ( -35.90) >DroYak_CAF1 22475 119 - 1 AGCAAUUCCACAGUAGAAACCCUUUUUGGAGUAGCGGAUUUCUUUUCCAUUUGAGGGGGAUCUAUCAGCUGCUGAGUUUCUACUUUGCUUUCAGUUUUAGGAGGUUCAAC-CUUCUGGGG (((((......(((((((((((.....))((((((.(((...((..((......))..))...))).))))))..))))))))))))))......(((((((((.....)-)))))))). ( -39.70) >consensus AUUAAGUCAACAGUAGAAACGUUUUGUGGAGUAGCUCUUUUCUUUUCCAUUUGAGGAGGAUCAAUCAGCUGCUGAGUUUCUACUUUGCUUUCAAUUUUAGGAGGUUCAAC_CUUCUGGGG ...........(((((((((((.....))(((((((......((((((......))))))......)))))))..)))))))))...........((((((((........)))))))). (-20.88 = -22.04 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:34 2006