| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,159,998 – 6,160,114 |
| Length | 116 |
| Max. P | 0.736739 |
| Location | 6,159,998 – 6,160,114 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 90.17 |
| Mean single sequence MFE | -19.56 |
| Consensus MFE | -14.60 |
| Energy contribution | -14.84 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.736739 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6159998 116 + 27905053 GCACCAGAAACACACGAAUCAGCCCAACCUGACAAGGAUGCUGGCAAACAAUCAUUCCUGAAGUCAUUUACUACACUUUCGAAAAUUCAAGGUUCAAGUAAAGCUCUUCACCCUGA ....(((..............(((((.(((....))).))..))).............(((((...((((((..(((((.((....)))))))...))))))...)))))..))). ( -22.00) >DroSec_CAF1 21836 116 + 1 ACACCAGAAACACAAGAAUCAGCUCAACCUGCCAAGGAUGCUGGCAAACAACCAUUCCUGAAGGCAUUUACCACACUUUCAAAAAUUCAAAGUUCAAGUAAAGCUCUUCACACUGA ....(((...........(((((....(((....)))..)))))..............(((((((.(((((...(((((.........)))))....))))))).)))))..))). ( -21.40) >DroSim_CAF1 23188 116 + 1 ACACCAGAAACACAAGAAUCAGCCCAACCUGCCAAGGAUGCUGGCAAACAACCAUUCCUGAAGGCAUUUACCACACUUUCGAAAAUUCAAAGUUCAAGUAAAGCUCUUCACAUUGA ............(((......(((((.(((....))).))..))).............(((((((.(((((...(((((.((....)))))))....))))))).)))))..))). ( -20.80) >DroEre_CAF1 22018 116 + 1 GCACCAGAAUCACACCAAUCAACACCACCUGCCAAGGAUAAUGGCAAGCAAUCAUUCCUGAAGACAUUUACCACACUUUCGAAAAUUCAAAGUUCAAGCAAAGCUCUUCACACUGA ....(((......................(((((.......)))))............((((((..(((.(...(((((.((....)))))))....).)))..))))))..))). ( -14.90) >DroYak_CAF1 22127 116 + 1 GCACCAGAAACACACCAAUCCACACAACCUGCCAACGAUACUGGCAAACAAUCAUUCCUGAAGACAUUUACCACACUUUCGAAAACUCAAGGUUCAAGUAAAACUCUUCACACUGA ....(((......................(((((.......)))))............((((((..(((((...(((((.((....)))))))....)))))..))))))..))). ( -18.70) >consensus GCACCAGAAACACACGAAUCAGCACAACCUGCCAAGGAUGCUGGCAAACAAUCAUUCCUGAAGACAUUUACCACACUUUCGAAAAUUCAAAGUUCAAGUAAAGCUCUUCACACUGA ....(((......................(((((.......)))))............((((((..(((((...(((((.((....)))))))....)))))..))))))..))). (-14.60 = -14.84 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:33 2006