Locus 2149

Sequence ID 3R_DroMel_CAF1
Location 6,156,262 – 6,156,355
Length 93
Max. P 0.511417
window3502

overview

Window 2

Location 6,156,262 – 6,156,355
Length 93
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 67.54
Mean single sequence MFE -18.43
Consensus MFE -4.37
Energy contribution -4.85
Covariance contribution 0.48
Combinations/Pair 1.42
Mean z-score -1.92
Structure conservation index 0.24
SVM decision value -0.04
SVM RNA-class probability 0.511417
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6156262 93 - 27905053
UGCUAAU----GUAUUCGCAGACACUAAAACGGUAUUA--U-----------UGCAUUAUUUUCCAUUAGCAUUU-CUACCGGUCUAGUUGCGAAUUUAGUAAAAACAAAU
((((((.----..(((((((...((((...(((((..(--.-----------(((..............))).).-.)))))...)))))))))))))))))......... ( -22.54)
>DroSec_CAF1 18010 106 - 1
UGCUAAU----GAAUUCGCAGACACUAAAACGAUAUUGUAUUGAACACUAUUUUUAUUAUUUUUCAUUAGUAUUA-UUACCGGUCUAGUUGCGAAUUCAUUACAAACAAAU
((.((((----((((((((((((.....((..((((((...((((.................)))).))))))..-))....)))....)))))))))))))))....... ( -22.23)
>DroSim_CAF1 19339 105 - 1
UGCUAAU----GAAUUCGCAGACACUAAAACGAUAUUGUAUUGAACACUAUUUUUAUUAUUUUUCAUUAGCAUUA--UACCGGUCUAGUUGUGAAUUCAUUACAAACAAAU
((.((((----(((((((((...((((...(((((.(((..((((.................))))...))).))--)..))...)))))))))))))))))))....... ( -20.13)
>DroEre_CAF1 18229 80 - 1
UGCUAAA----GAAGUGACAGACACAA-----------------------UUUUU----UUUUUCAUUAGCAUUAUUUACCAGUCUAGCUUUGCAUUUAGUACAAGCUAAU
((((((.----((((.((.(((.....-----------------------))).)----).)))).)))))).............(((((((((.....))).)))))).. ( -13.70)
>DroYak_CAF1 18241 85 - 1
UUCUAAAAAAAAAAGUGGCAGGCACUA-----------------------UUUUU---GUGUUUUAUUAGCAUUAUUUACCAGCCGAGUUGUGCAUUUAGUACAAACAUAU
..............(((...(((....-----------------------.....---(((((.....))))).........)))...((((((.....)))))).))).. ( -13.57)
>consensus
UGCUAAU____GAAUUCGCAGACACUAAAACG_UAUU___U_________UUUUUAUUAUUUUUCAUUAGCAUUA_UUACCGGUCUAGUUGUGAAUUUAGUACAAACAAAU
...........((((((((((((...........................................................)))....)))))))))............. ( -4.37 =  -4.85 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:32 2006