| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,132,931 – 6,133,036 |
| Length | 105 |
| Max. P | 0.640170 |
| Location | 6,132,931 – 6,133,036 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.57 |
| Mean single sequence MFE | -42.63 |
| Consensus MFE | -15.41 |
| Energy contribution | -15.14 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.36 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.640170 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6132931 105 + 27905053 CCACCCUGGGCAGGAGAUCCCUUCGUCCAUACGACCAUCGAACGAUGUCCCUGCUGGAGCCACCGACCUCGAGCAG---CAGUCGUAGUGGUGAAGGGG---UUUCCUACC ........((.((((((((((((((.(((((((((((((....))))...(((((.(((........))).)))))---..))))).))))))))))))---)))))).)) ( -50.40) >DroPse_CAF1 63650 105 + 1 CCACCCUGGGACGACGCUCCAUCCGGCCCUACGAUCAUCGGACGAUGUCUCUGCUGGAGCCACCAACAACCAGCAG---CAGCAGUGCUGGCGGUAGCA---GCGCCUACC ......((((.((..(((((..(((((.((.(((.((((....)))))).(((((((............)))))))---..).)).))))).)).))).---.)))))).. ( -35.50) >DroEre_CAF1 45369 105 + 1 CCACCUUGGGCAGGAGGUCCCUUCGUCCAUACGACCAUCGAACGAUGUCCCUGCUGGAGCCUCCGACCUCGAGCAG---CAGUCGAAGUGGCGAUGGAG---UCUCCUACC ........((.((((((..((.(((.((((.((((((((....))))...(((((.(((........))).)))))---..))))..))))))).))..---)))))).)) ( -41.70) >DroYak_CAF1 46144 105 + 1 CCACCCUGGGAAGGAGAUCCCUUCGUCCAUACGACCAUCGAACGAUGUCCCUGCUGGAGCCUCCGACCUCGAGCAG---CAGUCGAAGUGGCGAAGGGG---UCUCCUACC ........((.((((((((((((((.((((.((((((((....))))...(((((.(((........))).)))))---..))))..))))))))))))---)))))).)) ( -52.30) >DroAna_CAF1 40012 111 + 1 CAACUCUAGGGAGACGGUCGAUUAGACCAUACGACCACCGGACCAUGUCGCUGCUGGAACCGCCAACUACGAGCAGUAGCAGCAGAAGGAGCGACGAGGACAGGUCCUACC ...(((....)))..(((((...........)))))...(((((.((((.((((((..((.(((......).)).))..))))))..(......)...))))))))).... ( -34.90) >DroPer_CAF1 56248 105 + 1 CCACCCUGGGACGACGCUCCAUCCGGCCCUACGAUCAUCGGACGAUGUCGCUGCUGGAGCCACCAACAACCAGCAG---CAGCAGUGCUGCCGGUAGCA---GCGCCUACC ......((((.((..(((....(((((..(((((.((((....))))))((((((((............)))))))---)....)))..))))).))).---.)))))).. ( -41.00) >consensus CCACCCUGGGAAGAAGAUCCAUUCGUCCAUACGACCAUCGAACGAUGUCCCUGCUGGAGCCACCAACCACGAGCAG___CAGCAGAAGUGGCGAUGGGG___GCUCCUACC ......((((.((.........(((((.....((.((((....)))))).(((((.(............).))))).............))))).........)))))).. (-15.41 = -15.14 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:31 2006