Locus 2145

Sequence ID 3R_DroMel_CAF1
Location 6,120,438 – 6,120,535
Length 97
Max. P 0.972152
window3497

overview

Window 7

Location 6,120,438 – 6,120,535
Length 97
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 76.45
Mean single sequence MFE -23.40
Consensus MFE -13.58
Energy contribution -13.88
Covariance contribution 0.31
Combinations/Pair 1.15
Mean z-score -2.32
Structure conservation index 0.58
SVM decision value 1.69
SVM RNA-class probability 0.972152
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6120438 97 - 27905053
UCAGAUGAAGUUCGGUGA----GUGUGAGCAG-GAGAUUAUAUUC-CAAAAGCCAAAUAUAAUCCAUGCAGCACUCGGCUUGCAA-AACGU-UCACAUACACAUU
..............(((.----((((((((..-(.(((((((((.-.........)))))))))).((((((.....)).)))).-...))-)))))).)))... ( -26.30)
>DroVir_CAF1 32710 80 - 1
--------------GUGA----GUGU----AU-CAGAUUAUAUUC-CAAAAGCCAAAUAUAAUCCAUGCAGCACUCCGCUGGCAA-ACGGUUUUACAUACACAUC
--------------(((.----((((----(.-..(((((((((.-.........)))))))))..((((((.....))).))).-.......))))).)))... ( -18.20)
>DroWil_CAF1 35757 94 - 1
------GUAGAUAGGUAG----GUAUAUAUAGCCAGAUUAUAUUUUGAAAAGCCAAAUAUAAUCCAUGCAGCACUCGGCUUGCAAUAACGU-UUACAUACACAUU
------((((((.....(----((.......))).((((((((((.(.....).))))))))))..((((((.....)).)))).....))-))))......... ( -18.60)
>DroYak_CAF1 33441 97 - 1
UCAGAUGAAGUUCGGUGA----GUGUGAGCAG-GAGAUUAUAUUC-CAAAAGCCAAAUAUAAUCCAUGCAGCACUCGGCUUGCAA-AACGU-UCACAUACACAUU
..............(((.----((((((((..-(.(((((((((.-.........)))))))))).((((((.....)).)))).-...))-)))))).)))... ( -26.30)
>DroMoj_CAF1 45065 80 - 1
--------------AGGA----GUGU----GC-CAGAGUAUAUUC-CAAAAGCCAAAUGUAAUCCAUGCAGCACUCUGCUGGCAA-AACGUUUUACAUACACAAC
--------------.(((----((((----((-....))))))))-).........((((((..(.((((((.....))).))).-...)..))))))....... ( -20.70)
>DroAna_CAF1 28207 101 - 1
UCUGAUGGAGUUCGGUGAGUGAGUGUGAGCAG-GAGAUUAUAUUC-CUAAAGCCAAAUAUAAUCCAUGCGGCACUCGGCUUGCAA-AACGU-UCACAUACACAUC
...((((..(((..(..(((((((((..(((.-(.(((((((((.-.........)))))))))).))).)))))).)))..)..-)))((-......)).)))) ( -30.30)
>consensus
______G_AGUUCGGUGA____GUGUGAGCAG_CAGAUUAUAUUC_CAAAAGCCAAAUAUAAUCCAUGCAGCACUCGGCUUGCAA_AACGU_UCACAUACACAUC
......................(((((........(((((((((...........)))))))))..((((((.....))).))).............)))))... (-13.58 = -13.88 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:27 2006