| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,118,557 – 6,118,658 |
| Length | 101 |
| Max. P | 0.755175 |
| Location | 6,118,557 – 6,118,658 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 80.73 |
| Mean single sequence MFE | -17.60 |
| Consensus MFE | -11.16 |
| Energy contribution | -12.35 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.755175 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6118557 101 - 27905053 AAGAUUGUAAUCUAUGAAGUCUUCUGAGAUCUUCAAUUAAACAAUCAAACAACACUUGAAUUUA----------------AUCCCAUAGAUUGCACAUUUGUUAUGUCCGCCCAAAU .(((((((((((((((((((((....))).)))).((((((...((((.......)))).))))----------------))...)))))))))).))))................. ( -16.80) >DroSec_CAF1 30610 101 - 1 AAGAUUGUAAUCUAUGAAGUCUUCUGAUUUCUUAAAUUAAACAAUCAAACAACACUUGAAUUUA----------------AUCCCAUAGAUUACACAUUUGUUAUGUCCGCCCAAAU .((((((((((((((((((((....))))))....((((((...((((.......)))).))))----------------))...)))))))))).))))................. ( -17.20) >DroSim_CAF1 31599 101 - 1 AAGAUUGUAAUCUAUGAAGUCUUCUGAUUUCUUCAAUUAAACAAUCAAACAACACUUGAAUUUA----------------AUCCCAUAGAUUACACAUUUGUUAUGUCCGCCCAAAU .((((((((((((((((((((....))))))....((((((...((((.......)))).))))----------------))...)))))))))).))))................. ( -17.20) >DroEre_CAF1 30946 115 - 1 AUGUUUGUAAU--AAGAAUUCUGCCGAUUCCGUCUGUUAAACAUUCAGACAAUACUUGAAUUUAAAGAUUUAGACCCCAAAUUUCGUAGAUUACACAUGUGCUGUGUCCGCACAAAU .....(((((.--......(((((.((....(((((.........))))).....(((((((....)))))))..........))))))))))))..(((((.......)))))... ( -19.21) >consensus AAGAUUGUAAUCUAUGAAGUCUUCUGAUUUCUUCAAUUAAACAAUCAAACAACACUUGAAUUUA________________AUCCCAUAGAUUACACAUUUGUUAUGUCCGCCCAAAU ......(((((((((((((((....)))))).............((((.......))))..........................)))))))))((((.....)))).......... (-11.16 = -12.35 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:26 2006