Locus 2141

Sequence ID 3R_DroMel_CAF1
Location 6,115,529 – 6,115,630
Length 101
Max. P 0.987828
window3493

overview

Window 3

Location 6,115,529 – 6,115,630
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 88.46
Mean single sequence MFE -25.12
Consensus MFE -23.42
Energy contribution -23.62
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.93
SVM decision value 2.09
SVM RNA-class probability 0.987828
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6115529 101 - 27905053
GGCUGCAAUUGUAUCUUAAAGAUACGAUUACAUAGAUGCAUAACAAAUGCGCGAGGCACGCGUGCAGCUCCCCCUACCCCCCCCCCCCCCGCAAUCACUUA
(((((((((((((((.....)))))))))...................(((((.....)))))))))))................................ ( -24.70)
>DroSec_CAF1 27611 93 - 1
GGCUGCAAUUGUAUCUUAAAGAUACGAUUACACAGAUGCAUAACAAACGCGCGAGGCACGCGUGCAGCUCCCCCAGCC--------CCCCGCAUCCACUUA
...((.(((((((((.....))))))))).))..(((((........((((((.....))))))..(((.....))).--------....)))))...... ( -25.80)
>DroSim_CAF1 28252 93 - 1
GGCUGCAAUUGUAUCUUAAAGAUACGAUUACACAGAUGCAUAACAAAUGCGCGAGGCACGCGUGCAGCUCCCCCUGCA--------CCCCGCAUCCACUUU
((.((((((((((((.....)))))))))........((((.....))))(((.....)))((((((......)))))--------)...))).))..... ( -29.10)
>DroEre_CAF1 27996 93 - 1
GGCUGCAAUUGUAUCUUAAAGAUACGAUUACACAGAUGCAUAACAAAUGCGCGAGGCACGCGUGCACCUCUCCCUGUC--------CCGCUUAUUCCCUUA
(((.(.(((((((((.....))))))))).)((((..((((.....))))..((((((....)))..)))...)))).--------..))).......... ( -21.30)
>DroYak_CAF1 28586 93 - 1
GGCUGCAAUUGUAUCUUAAAGAUACGAUUACACAGAUGCAUAACAAAUGCGCGAGGCACGCGUGCAGCUCCCCCUGCC--------CCUCUCAUGAUCUUG
(((((((((((((((.....)))))))))...................(((((.....))))))))))).........--------............... ( -24.70)
>consensus
GGCUGCAAUUGUAUCUUAAAGAUACGAUUACACAGAUGCAUAACAAAUGCGCGAGGCACGCGUGCAGCUCCCCCUGCC________CCCCGCAUCCACUUA
(((((((((((((((.....)))))))))...................(((((.....)))))))))))................................ (-23.42 = -23.62 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:23 2006