Locus 2139

Sequence ID 3R_DroMel_CAF1
Location 6,111,554 – 6,111,652
Length 98
Max. P 0.533615
window3491

overview

Window 1

Location 6,111,554 – 6,111,652
Length 98
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 84.11
Mean single sequence MFE -20.95
Consensus MFE -12.73
Energy contribution -12.61
Covariance contribution -0.12
Combinations/Pair 1.11
Mean z-score -1.84
Structure conservation index 0.61
SVM decision value 0.00
SVM RNA-class probability 0.533615
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6111554 98 - 27905053
UACCUUCUAACAAGGAAAGUACGGCAGUAAUCAUUAUGUUUAAGCUGCCGUGUUUGGCUUACAAAUUUAAUGCAUUAUUUUGCAUUUGCAUUACAAAU----
..((((.....))))....(((((((((...............)))))))))((((.....))))..(((((((............))))))).....---- ( -21.76)
>DroSec_CAF1 23674 91 - 1
UACCUUCUAACAAGGAAAGUAUGGCAGUUACCAUUAUGCUUAAGCUACCGUGUUUGCCUUACAAAUUUAAUGCAUUAUUGC-----------ACAAAUGAUA
..((((.....))))...(((.(((((.(((......((....))....))).))))).)))........((((....)))-----------)......... ( -17.70)
>DroSim_CAF1 24277 91 - 1
UACCUUCUAACAAGGAAAGUAUGGCAGUUACCAUUAUGCUUAAGCUGCCGUGUUUGGCUUACAAAUUUAAUGCAUUAUUGC-----------ACAAAUGAUA
..((((.....))))....((((((((((.............))))))))))((((.....)))).....((((....)))-----------)......... ( -18.62)
>DroEre_CAF1 23952 91 - 1
UACCUUCUAACAAGGAAAGUAAGGCAGUGAGCAUUAUGCGUAAGCUGUCGUGUUUGGCUUACAAACUUAAUGCAUUAUUGC-----------ACAAGCUAUA
..((((.....))))..(((...(((((((((((((...((((((((.......)))))))).....)))))).)))))))-----------....)))... ( -25.70)
>consensus
UACCUUCUAACAAGGAAAGUAUGGCAGUUACCAUUAUGCUUAAGCUGCCGUGUUUGGCUUACAAAUUUAAUGCAUUAUUGC___________ACAAAUGAUA
..((((.....))))...(((.((((((...............))))))..(((((.....)))))....)))............................. (-12.73 = -12.61 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:21 2006