Locus 2136

Sequence ID 3R_DroMel_CAF1
Location 6,103,124 – 6,103,216
Length 92
Max. P 0.952518
window3487

overview

Window 7

Location 6,103,124 – 6,103,216
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 84.01
Mean single sequence MFE -31.77
Consensus MFE -24.84
Energy contribution -24.57
Covariance contribution -0.27
Combinations/Pair 1.31
Mean z-score -3.75
Structure conservation index 0.78
SVM decision value 1.42
SVM RNA-class probability 0.952518
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6103124 92 + 27905053
UACAAAUGCCACACUUGCAUAUGGGUUAAUGUAAGUGUGUGGGUAGGUUUAAUCAUAAUUUACUAGGCCAGCGGCCACAGCUGUUGGCUUUU
........((((((((((((........))))))))))).)((((((((.......))))))))(((((((((((....))))))))))).. ( -35.40)
>DroSec_CAF1 15273 91 + 1
UGCAAACG-CACACUUGCAUGUGGGUUAAUGUAAGUGUGUGGGUAGGUUUAAUCAUAAUUUACUAGGCCAGCGGCCACAGCUGUUGGCUUUU
......((-(((((((((((........)))))))))))))((((((((.......))))))))(((((((((((....))))))))))).. ( -41.00)
>DroSim_CAF1 15818 91 + 1
UGCAAACG-CACACUUGCAUGUGGGUUAAUGUAAGUGUGUGGGUAGGUUUAAUCAUAAUUUACUAGGCCAGCGGCCACAGCUGUUGGCUUUU
......((-(((((((((((........)))))))))))))((((((((.......))))))))(((((((((((....))))))))))).. ( -41.00)
>DroEre_CAF1 15502 91 + 1
AGCAAAUG-CGCACUUGUAUGUGGGUUAAUGUAAGUGUGAGGGUGAUUUUAAUCAUAAUUUACUAGGCCAGCGGCCACAGCUGUUGGCUUUU
.(((...(-(.(((......))).))...))).((((.((..(((((....)))))..))))))(((((((((((....))))))))))).. ( -29.20)
>DroYak_CAF1 15668 91 + 1
UGCAAAGG-CGCACUUGUAUGUGGGUUAAUGUAAGUGUGAGGGUGAUUUUAAUCAUAAUUUACUAGGCCAGCGGCCACAGCUGUUGGCUUUU
((((..((-(.(((......))).)))..))))((((.((..(((((....)))))..))))))(((((((((((....))))))))))).. ( -30.40)
>DroPer_CAF1 16648 83 + 1
UGUAUCUG-AAUACACGUAUCUG------UGUAACUGUG--UGUAAUAUUAAUUAUAAUUUACUGGACCAAUGCCCACAGAUGUUUGUUUUU
.......(-((.(((..((((((------((........--((((((....)))))).......((.......))))))))))..))).))) ( -13.60)
>consensus
UGCAAAUG_CACACUUGCAUGUGGGUUAAUGUAAGUGUGUGGGUAAGUUUAAUCAUAAUUUACUAGGCCAGCGGCCACAGCUGUUGGCUUUU
.........(((((((((((........)))))))))))..(((((.((.......)).)))))(((((((((((....))))))))))).. (-24.84 = -24.57 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:17 2006