Locus 2130

Sequence ID 3R_DroMel_CAF1
Location 6,093,976 – 6,094,070
Length 94
Max. P 0.914444
window3479

overview

Window 9

Location 6,093,976 – 6,094,070
Length 94
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 76.45
Mean single sequence MFE -19.31
Consensus MFE -11.51
Energy contribution -11.93
Covariance contribution 0.42
Combinations/Pair 1.20
Mean z-score -1.92
Structure conservation index 0.60
SVM decision value 1.10
SVM RNA-class probability 0.914444
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6093976 94 + 27905053
AGUCCGCAGCACGUUCCCAAUUAAUC---GCCGCUCGCU---UCAUUUUAUCUACGAGCAUCCAACUAUCAGUUGG--CGCUGCGCUGAUCAACACCUUCA---A
.(((((((((................---...(((((..---............)))))..(((((.....)))))--.))))))..)))...........---. ( -23.34)
>DroSec_CAF1 6037 97 + 1
AGUCCACAGCACGUUCCCAAUUAAUCGACGCCACUCGCU---UCAUUUUAUCUACGAGCAUCCAACUAUCAGUUGG--CGCUGCGCUGAUCAACACCUUCA---A
......((((.(((........(((.((.((.....)).---)))))......))).(((.(((((.....)))))--...))))))).............---. ( -17.84)
>DroSim_CAF1 6012 97 + 1
AGUCCGCAGCACGUUCCCAAUUAAUCGACGCCGCUCGCU---UCAUUUUAUCUACGAGCAUCCAACUAUCAGUUGG--CGCUGCGCUGAUCAACACCUUCA---A
.(((((((((......................(((((..---............)))))..(((((.....)))))--.))))))..)))...........---. ( -23.34)
>DroEre_CAF1 6038 86 + 1
AGUCAGCAGCACGUUCCCAAUUAAUCGCUCAUCUC--------------AACCACGAGCAUCCAACUAUCAGUUGC--CGCUGCUCUGAUCAACACCUCCA---A
.(((((.((((((.............((((.....--------------......))))...((((.....)))).--)).)))))))))...........---. ( -18.00)
>DroYak_CAF1 6216 97 + 1
AGUCCGCAGCACGUUCCCAAUUAAUCGCUCAUUUUAUCU---UCACUUUAUCUACGAGCAUCCAACUAUCAGUUGG--CGCUGCUCUGAUCAACACCUUUA---U
.....(((((................((((.........---.............))))..(((((.....)))))--.))))).................---. ( -19.05)
>DroAna_CAF1 5612 103 + 1
--CCAGCAGCACGCUCCCAAUUAAUCUCUCACUUGGUCUCUGUCUCUAUCUCUCCGACUGCCCGGCUAUCAUGCGGCCCGCAGCUCCGAUCAACACCUUCGCCCA
--..(((.....))).................((((((..........((.....))((((..((((.......)))).))))....))))))............ ( -14.30)
>consensus
AGUCCGCAGCACGUUCCCAAUUAAUCGCUCACGCUCGCU___UCAUUUUAUCUACGAGCAUCCAACUAUCAGUUGG__CGCUGCGCUGAUCAACACCUUCA___A
....((((((..((((.......................................))))..(((((.....)))))...)))))).................... (-11.51 = -11.93 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:09 2006